Stenotrophomonas rhizophila: BAY15_2418
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Entry
BAY15_2418 CDS
T04500
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
srh
Stenotrophomonas rhizophila
Pathway
srh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAY15_2418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srh03019
]
BAY15_2418
03009 Ribosome biogenesis [BR:
srh03009
]
BAY15_2418
Enzymes [BR:
srh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BAY15_2418
Messenger RNA biogenesis [BR:
srh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BAY15_2418
Ribosome biogenesis [BR:
srh03009
]
Prokaryotic type
rRNA processing factors
BAY15_2418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AOA72852
UniProt:
A0A1B2N5S4
LinkDB
All DBs
Position
2763534..2767040
Genome browser
AA seq
1168 aa
AA seq
DB search
MAFRAVAAREERNMKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRIT
RLEPSLEAAFVEYGGERHGFLPLKEISRDYFQAGVDHNKAGIRELLREGQEVVVQVDKEE
RGNKGAALTTFISLAGRYMVLMPNSPTAGGVSRRIEGEDRAALKEALDKLNIPDDMGVII
RTAGVGRDAEELQWDLDYLLQVWKSIAEAALTKPAPFLIYQESRLIVRALRDYLRADVGE
ILVDTQELYDTAREFMQQVMPQTLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGG
SIVVDQTEALTAIDVNSSRATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFID
MSSNKHQREVENRLQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDG
HGRMRSVESLSLSIIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHDAP
IVIVADEQLHTPHYEVTRLRENELGEESGKPSYQRGTPRKLPVHALTKAQLNIPVAPAVT
NVKHSSPAPVREVAEPVAAAPAPVAPAPVAAPAATGVVGWLKRIFGGEPAPAAAPQTNAR
PAQDGNRNGRNKDRNGKDRNGRRDERGERGQGQGQQGQARGKDRRDDRGERAGKGERRDD
RRQDVAAQASAPAAGQAQQGKPRNEQQQPKAPRNEQQQPKLNQNQKQKPPRQQNEGDKPA
RQPQADAAKPVQTGVTAADAALVAAAVTVADAATPATTAPTAAPVSNNALADENQVTAVA
VDGEANEHGEAPGTGDDASGEGASRRRRGRRGGRRRRRGNGEQAAGSDGLNDDGGLDDDA
DGDEQDGDQDGDTTAPTARPAARSTGSNPEFDFDDDGAAPAAPAAPVQAPRPAPVAAVAA
AAPLAVVSSPVVTAGHSEAAPAPKAEPVAERTPSYTDRVPFVESPMPASAPVAKAPEAEK
PVVAEAPKAVEAPVAPVAPVVTEAPKAVEAPAVTEAPKAVEAPVAAEAPKAVEAPVVTEA
PKAVEAPVVTEAPKAIETPVVTPDPVTPAPTAPVAVETPKAAEASTSAPVVEHKGPTEVG
RPVQTSMLDAVDAVPAAPAAPAPVARAESAAVAPAVQNGQLFGSAASDAAPTDAAAQAAH
AEAREDIPTDVAKADDADKQDPEKTDKA
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggcgttccgcgcggtagcagcgcgcgaggaacgcaatatgaagcgaatgctgatcaac
gccacgcaggctgaagagctgcgggtagccatcgtggatggccagacgctgtacgacatc
gacatcgaacagccgtccaaggaacagaagaagtcgaacatctacaagggccgcatcacg
cgccttgagccgtcgctggaagcggccttcgtggaatacggtggcgaacgccacggcttc
ctgccgctgaaggaaatctcccgcgattacttccaggccggggtcgaccacaacaaggcc
ggcatccgcgaactgctgcgtgaaggccaggaagtggtggtccaggtcgacaaggaagag
cgtggcaacaagggcgccgccctgaccacgttcatctccctggccggccgctacatggtg
ctgatgccgaactcgcccaccgccggtggcgtgtcgcgtcgcatcgagggcgaagaccgc
gccgcgctgaaggaagcgctggacaagctgaacatccccgacgacatgggcgtgatcatc
cgcaccgccggcgtcggccgcgatgccgaagagctgcagtgggacctggactacctgctg
caggtctggaagtcgatcgccgaagcggcgctgaccaagccggccccgttcctgatctac
caggaatcgcgcctgatcgtgcgcgccctgcgcgactacctgcgcgccgacgtgggcgag
atcctggtcgacacccaggagctgtacgacaccgcccgcgaattcatgcagcaggtgatg
ccgcagaccctgcgcaagctcaagcactacaccgacgacattccgctgttcaaccgcttc
cagatcgaatcgcagatcgaaggcgcctatgaacgcaacgtgcgcctgccctcgggcggc
tcgatcgtggtcgaccagaccgaagcgctgaccgccatcgacgtgaactcctcgcgcgcc
accaagggcagtgacatcgaggacaccgcgttccagaccaacctggaagcggccgaggaa
gtggcccgccagctgcgcctgcgcgatctgggcggcctggtggtgatcgacttcatcgac
atgtcctccaacaagcaccagcgtgaggtcgagaaccgcctgcagaacgcgctcaagtac
gaccgtgcgcgcgtgcagctgggccgcatttcgcgcttcggcctgatggaaatgagccgc
cagcgcctgcgcccgagcctgggcgaatccagccagatcgtctgcccgcgttgcgacggc
catggccgcatgcgctcggtggaatcgctgtcgctgtcgatcatccgcgtcgccgaagag
catgcgatgaaggaaaacaccgggcaggtgctggtccaggccccggtggagatcgccaac
tacctgctcaacgaaaagcgcagcgccctgcgcgagatcgaacagcgccatgacgcgccg
atcgtgatcgtggccgacgagcagctgcacacgccgcattacgaagtgacccgcctgcgt
gaaaacgagctgggcgaagaaagcggcaagccgagctaccagcgtggcaccccgcgcaag
ctgccggtgcatgccctgaccaaggcgcagctgaacatcccggttgccccggcggtcacc
aacgtcaagcacagctccccggcgccggtccgcgaggttgccgagccggtggctgctgcc
ccggccccggtcgccccggccccggtcgctgcaccggccgccaccggcgtggtcggctgg
ctcaagcgcatctttggtggcgaaccggcgccggccgccgccccgcagaccaacgcgcgc
ccggcccaggacggcaaccgcaacggccgtaacaaggaccgcaacggcaaggaccgcaac
ggccgccgcgatgagcgtggcgaacgtggccagggtcagggccagcagggccaggcccgt
ggcaaggaccgtcgcgacgaccgtggcgaacgcgccggcaagggcgagcgccgcgatgac
cgccgccaggacgtggccgcacaggcgtccgcaccggccgccggccaggcccagcagggc
aagccgcgcaacgagcagcagcagcccaaggctccgcgcaatgagcagcagcagccgaag
ctgaaccagaaccagaagcagaagccgccgcgccagcagaacgagggcgacaagcccgcg
cgtcagccgcaggccgatgccgccaagccggtgcagaccggcgtgaccgctgccgatgcc
gcgctggttgcagccgcggtaaccgtggccgatgccgccaccccggcgaccacggcgccg
accgcggccccggtgtcgaacaacgcattggccgatgagaaccaggtgaccgccgttgcg
gtggatggcgaagccaacgagcacggcgaagcgccgggcaccggcgatgatgccagtggc
gagggcgcctcgcgccgtcgtcgtggccgtcgcggtggccgccgccgtcgtcgtggcaat
ggcgagcaggctgcaggcagcgatggcctgaacgatgacggcggtctggatgacgacgcc
gacggtgacgagcaggacggcgaccaggacggtgacaccaccgccccgactgcccgcccc
gccgcccgcagcaccggatcgaacccggagttcgacttcgatgacgacggcgccgccccc
gctgctccggccgcaccggtccaggccccgcgcccggccccggtggctgccgtggccgcc
gccgcgccgctggccgtggtcagcagcccggtggtgaccgccggtcacagcgaggccgcc
ccggccccgaaggccgagccggtggcagagcgcaccccgtcctacaccgaccgcgtgccg
ttcgtggaatcgccgatgccggcctccgcaccggtcgccaaggcgccggaggctgagaag
ccggtggtggcggaagcaccgaaggcggttgaagccccggtcgccccggtcgccccggtc
gtgaccgaagcgccgaaggctgttgaagccccggctgtgaccgaagcgccgaaagcggta
gaagcgccggtcgcagctgaagcgccgaaggctgtcgaagctccggtcgtgaccgaagcg
ccgaaggcagttgaagccccggtcgtgaccgaagcgcctaaggcgattgaaacgcccgtc
gtgacgccggacccggtgaccccggccccgaccgcacccgtcgccgtcgagaccccgaag
gccgccgaagccagcaccagcgcgccggttgtagagcacaagggcccgaccgaagtcggt
cgtccggtgcagaccagcatgctggacgcagtggacgccgttccggccgcgccggctgcc
ccggcaccggtggcacgcgcggaatcggccgccgttgcaccggcggtgcagaacggccag
ctgttcggcagcgccgccagcgacgccgcaccgaccgacgccgccgcccaggccgcgcac
gccgaagcccgcgaagacatcccgaccgatgtcgccaaggccgacgatgccgacaagcag
gacccggaaaagaccgacaaggcctga
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