Stenotrophomonas rhizophila: BAY15_2853
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Entry
BAY15_2853 CDS
T04500
Name
(GenBank) DEAD/DEAH box helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
srh
Stenotrophomonas rhizophila
Brite
KEGG Orthology (KO) [BR:
srh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srh03019
]
BAY15_2853
Enzymes [BR:
srh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BAY15_2853
Messenger RNA biogenesis [BR:
srh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BAY15_2853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_N
DEAD
HA2_C
AAA_19
AAA_22
AAA_30
NACHT
nSTAND3
AAA_23
SRP54
AAA_25
T2SSE
ResIII
ABC_tran
Cas3-like_C_2
AAA_16
TsaE
Motif
Other DBs
NCBI-ProteinID:
AOA73287
LinkDB
All DBs
Position
complement(3265722..3269822)
Genome browser
AA seq
1366 aa
AA seq
DB search
MTAIKQPDASSLSSQQAAIDGAMSRDRGRLLGMLSRWRAKPADAGVAAAFQQALHASVQR
RQARALNQPSISLDDSLPIAREAERITALIREHQVVVIAGETGSGKTTQLPKLCLAAGRG
QAGMIGCTQPRRIAARAVATRVAQELHSELGTTVGYQVRFTDRVGDDTRIKFMTDGILLA
EISSDRWLSQYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTSRFAQH
FDDASVISVEGRTFPVEVRYRPLEGEGGGDEDGGRDGERTVNDAVVAAVDEITRLDPRGD
ILLFFPGEREIRDAHQALERRKYRETEVLPLYARLSVKDQDAVFNPGSKRRIVLATNVAE
TSLTVPRIRYVIDPGLARVKRYSPRQKLDRLHIEAVSQASANQRKGRCGRVSAGICYRLY
SEADFQSRAEFTDPEIRRSSLSGVILRMLQLGLGRIEDFPFLEAPDERAIADGWQQLGEL
GAIDNDRRLTPIGRQMARLPVDVKLARMLVAAQAQGCLRPMLVIASFLGIQDPRERPPEA
RAAADNAHALFADGRSEFVGVLRLWEGYRQAHEDLTQSKLRGWCDRHFLGFLRMREWREL
HRQLRVLCEELGWSEEPVDSAMAPLLAGSSAPAPVRDDAEKAKATRGQQHRAARLAREGK
TEPPAATVAPAAPAAAVEARNAFSERVRAAAYQTLHRALIAGLPTQIGHRSDKGDFLAPR
QRRFLPFPGSVMAKRPPPWLLAATLLDTQKVWGLTNAAIEPDWVIAELPHLLLRKHFDPH
WSRAQGQVLASEQISLFGLVLAPKKPVHYGRIAPGEAHDIFVRQALVTGEINTRASVIAD
NLKVLEQAREEEAKLRRAGIVADEGWQARWYLDRIPAEIHSATGLDTWWKALAPEKKRAL
AWTLADLLPGEGSDAERYPTYLPLGDARLALHYRFEPGSDEDGVSLDVPLHLLNALDPAR
LSWLAPGFVADKASALIRSLPKAMRRNYVPAPDFGRAFAEAFPAPSADDLRGELARFLSR
ATGAQVAAIDFDESALDPHLRMNLRLHDAQGRLLAASRDLEALRARFGAQAGDAFAARAG
RALAAEGLRDFPVAPIPLQVPGEAGVPAYPALVDAGESASLRIFADRNEALEQHPRGVRR
LMDIALADKAKQARKQLPVPPKTGLLYASIESQERLRGDLVDAALNAVLADGLGEIRDPA
AFAKRRDAAGRDLFGEAMARLKLAENILAHVAELKPLLEAPLMGWARGNLDDLEQQLAAL
VHPGFLRETPAEALAQYPRYLRAMILRSERAKRDPPRDQARMLELRPFLDALEDAQARGL
RDRTQWQALRWDLEELRVSLFAQELGARTGISAKKLAQRVAALRQA
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctatcaaacaacccgatgcttcgtccctgtcttcgcagcaggccgccattgac
ggggccatgagccgtgatcgcggtcgtctgctcggcatgctctcgcgctggcgggccaaa
ccggccgatgccggcgtggcggcggcattccagcaggccctgcacgcgtcggtgcagcgg
cgccaggcgcgggcgctcaaccagccgtcgatcagtctggacgacagcctgccgatcgcg
cgtgaagccgagcgcatcaccgcgctgatccgcgaacaccaggtcgtggtcatcgcgggc
gaaaccggctcgggcaagaccacccagctgcccaagctgtgcctggccgccggccgcggc
caggccgggatgatcggctgcacccagccgcgacggattgccgcacgtgcggtggccacc
cgcgtggcgcaggagctgcactccgagctgggcactacggtcggctaccaggtgcgcttc
actgaccgggtcggcgacgatacccgcatcaagttcatgaccgatggcatcctgctggct
gaaatcagcagcgaccgctggctgtcgcagtacgacacgatcatcgtcgacgaagcgcac
gaacgcagcctcaacatcgatttcctgctcggctacctcaagcagctgctgcgcaagcgc
ccggacctcaagctgatcgtcacttcggcgacgattgatacctcgcgcttcgcccagcac
ttcgacgatgcgtcggtgatcagcgtggaaggccgcacgttcccggtggaagtacgctac
cgcccgctggaaggcgagggcggtggcgatgaggacggcggccgcgatggcgagcgcacc
gtcaacgatgcggtggtggcggcggtggatgagatcacccggctcgacccgcgcggtgac
atcctgctgttcttccccggtgaacgcgaaatccgcgacgcgcaccaggcgctggaacgg
cgtaaataccgcgaaaccgaagtgctgccgctgtacgcgcggctgtcggtgaaggaccag
gacgcggtgttcaacccgggcagcaaacgccgcatcgtgctggccaccaacgtggccgaa
acctcgctcacggtgccgcgcatccgctacgtgatcgatccgggcctggcccgggtcaag
cgctacagcccgcgccagaagctcgaccggctgcatatcgaggcggtttcgcaggccagc
gccaaccagcgcaagggccgttgcggtcgcgtctccgcaggcatctgctatcggctttac
tcggaagcggatttccagtcgcgcgccgagttcaccgatccggaaatccgccgttccagc
ctgtccggggtgatcctgcgcatgctgcagctgggcctgggccggatcgaggatttcccg
ttcctggaagcccccgacgagcgcgccattgccgatggctggcagcagctcggcgagttg
ggcgcgatcgacaacgaccgccggctcaccccgatcggccgccagatggcgcgcctgccg
gtggatgtaaagctggcccgcatgctggtcgccgcgcaggcgcagggctgcctgcgcccg
atgctggtcattgcgtcgttcctgggcatccaggatccgcgcgaacgcccgcccgaagcg
cgtgctgcggctgacaacgcacacgcgctgtttgccgatgggcgctctgaattcgtcggc
gtgctgcgcctgtgggagggctatcgccaggcccacgaagatcttacccaatccaagctg
cgcggctggtgcgatcgccatttcctcggcttcctgcgcatgcgcgaatggcgcgagctg
caccgccagctgcgggtgctgtgcgaagagctgggctggagcgaagagccggtggacagt
gcgatggcgccgttgctggccggttcgtcggcccctgcgcccgttcgcgatgatgccgag
aaggccaaggccacccgtggccagcagcatcgtgccgcccgcctggcccgcgagggcaag
accgaaccgccggctgccacggttgcgccagccgcccccgcagcggccgtagaggcccgc
aatgccttcagcgagcgggtgcgtgccgcggcctaccagaccctgcaccgtgcactgatc
gccggcctgccgacccagatcggccatcgcagcgacaagggcgatttcctggccccgcgc
cagcgccgcttcctgcccttccccggctcggtgatggccaagcggccgccgccatggctg
ctggccgccaccctgctggatacgcagaaggtatggggcctgaccaatgcggcgatcgaa
ccggactgggtgatcgccgaactgccgcacctgctgctgcgcaagcactttgatccgcac
tggtcgcgtgcgcagggccaggtgctggcctcggagcagatcagcctgttcgggctggtg
ctggcaccgaagaagccggtgcactacggccgcatcgccccgggcgaggcgcacgacatt
ttcgtgcgccaggcgctggtcaccggcgagatcaacacccgcgccagtgtcatcgcggac
aacctcaaggtgctggagcaggcgcgcgaagaagaagccaagctgcgccgcgccggcatc
gtggccgatgaaggctggcaggcgcgctggtacctggaccggattccggccgagatccac
tcggccaccgggctggatacctggtggaaggcgctggccccggagaagaagcgcgcgctg
gcgtggacgctggccgacctgctgccgggcgagggcagcgatgccgagcgctacccgacc
tacctgccgctgggcgatgcgcggctggcgctgcactaccgcttcgaaccgggaagcgac
gaagacggcgtcagcctggatgtgccgttgcacctgctcaacgcgttggatccggcacgt
ctgtcgtggctggcgccgggattcgtggccgacaaggcctccgcgctgatccgcagcctg
cccaaggccatgcgccgcaactacgtgccggcgccggacttcgggcgcgccttcgccgag
gcgttccccgcgccgagcgccgacgacctgcgtggcgaactggcccggttcctgtcgcgc
gcgacaggcgcgcaggtggcggccatcgatttcgatgaaagcgcgctcgacccgcacctg
cgcatgaacctgcgcctgcacgatgcgcagggcaggttgctggccgcctcgcgcgacctg
gaggcgctgcgcgcccgcttcggcgcgcaggccggcgatgcattcgccgcacgcgctggc
cgtgcgttggcagccgaaggactgcgtgatttcccggtggcgccgattccgctgcaggta
cccggtgaagccggcgtgccggcgtatccggcgctggtggatgccggtgaatccgcctca
ctgcgcattttcgccgaccgcaacgaagcgttggagcagcatccgcgtggcgtacgccgg
ctgatggatatcgcgctggccgacaaggccaagcaggcccgcaagcagctgccggtgccg
cccaagaccggcctgctgtatgcctcgatcgaatcgcaggaacgcctgcgcggtgacctg
gtggatgcggcgctgaatgccgtgctggccgacggcctgggcgagatccgcgacccggcg
gcctttgccaagcggcgcgatgccgccggccgcgacctgttcggcgaggcgatggcgcgg
ctgaagctggccgagaacatcctggcgcacgtggccgagctcaagccactgctggaagca
ccgctgatgggctgggcgcgcggcaacctggatgacctggaacagcagctggcggcgctg
gtccatcccgggttcctgcgagagacgcctgctgaagcactggcgcagtatccgcgctac
ctgcgcgcgatgatcctgcgcagcgagcgggccaagcgcgatccgccgcgcgaccaggcg
cggatgctggagctgcgtccgttcctggatgccctggaagacgcgcaggcgcgcggcctg
cgcgaccgcacgcagtggcaggcgctgcgctgggacctggaagaattgcgggtgtcgctg
ttcgcgcaggaactgggggccaggaccggcatctcggccaagaagctggcccaacgcgtg
gcggcgctgcgccaggcgtga
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