Sporomusa rhizae: SRRS_43710
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Entry
SRRS_43710 CDS
T11738
Symbol
cdiA2_1
Name
(GenBank) tRNA nuclease CdiA-2
Organism
srha Sporomusa rhizae
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GFIT
Motif
Pfam:
Fil_haemagg_2
TPS
Fil_haemagg
Motif
Other DBs
NCBI-ProteinID:
XER08754
LinkDB
All DBs
Position
complement(4632822..4641164)
Genome browser
AA seq
2780 aa
AA seq
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MSGFSLKKKAQKLTAWITLVLFTLQPSFIAAQTVADPNAAKQNRPTVESAQNGTPVVQIA
APTASGVSHNLYQQFNIDPKGLILNNSYGLSKTQLAGYIQGNPNLAGGSARVILNEVTSN
NISHLRGYLEVAGQRADVIIANRNGIIGNGFGFINTNRGVLTTGTPVFGGNGSLEAFRVT
GGQIAVQGDGINATGADRVDLISRAITVNAGIWAKELNAVTGTNTVDYNTLTTHPITGDS
TEPQPQVAIDVSALGGMYANKIKLVGTEQGVGVNSQGTLSADSGNLILTNNGQITLAGKT
SAAGRININATDDINTQGTIFAKQNTSVNSTGTLTNTGTIAAANNTELTAKTIASTGTIA
AGIKTDGTIGTAGNLTVTATETLTATGKNIAGSNLAVTGKAIDASGAATYAGNAATITTT
NGDIDHSGATTQVNGQLTLNATGTVKNLKNTNNQTGQITAGKIAITANDIQNQDGIIQQT
GSGDTTLTATGTIDNTAGIIATNGTNLTVKANTINNRQGKLQHAGTGILAIQTTDGVQNT
TGTIATNGQAIINAQNLDNTQGTITAGQDLKISLNGNLTNAGTITAIKDAEINAKDMTNK
TGGTIITGNNLNLVTSGTLTNQGTIYAQGNTNLLNADTLTNTGLLAAAKDTTLSANTISS
TGVIGSGLNSNGSVGNTGNLTIKANATVATNGQTLAGGDLTITGTAIDHTGGKTSAGGTV
SLTATNGDINNTGGEIQTHGALTISVAGSLKNDKDSQGKTAQITADKITAVANSISNKGG
TIKQSGAENTNLTAATAIDNTDGTIASNADNFTVETGILTNTNGKIQHAGTGALTIQAAN
TLTNTSGSIATNGRQTIQAQALDNTKGTIVAKKQLTVNAPSIVNSQGTIAGDTIHITSQT
ITNNQQGLIQAQKGLTVKAQNLDNQTGSLLSLDNSGAIIAIDQTIQNSNGVIGGNGDVSI
TAANLTSQQGQVLAQGNLNLTTSQRIDNTNGKMVSQQNINLNQTNATVNNTGGTINAGGE
LNVQANTINSTGGNLTATTDVNLTAQNLVNGTTTVGRDVNINVSGDYTQESGQVQANRDV
NIQVTGTATNKGNINAVNDVKLTAGTVNNNTGAVVSANKQLKVSANAVNNGGKLDSDLVD
VQAQNVNNTGTVIAKNLTMNADTIKNTGDSAMLATTTEMNLTAKTALENKDGATIYSVGN
ITIAGSDTRDEKGQPVDRSSSVLNQSANIEADGNIAIYAKDITNKKRVTEAGQTVVSEVI
YSKPIDREVYINCYSGGGDSGFSWTEKDYVKNLFNPSTAIKLSDTGGLDNRGGRHGTIWL
LGTTVTETNFIQDSPEGKITAGGNITLRTDTVNNNNSSVTAAGKLDSTGKLNNISQGRVR
ITTRHLADSYRHHVMYCGDMVYYYYNESDIGETNAVKLYRSTQLHDENTYEQLPGATAIF
EGKKQVIINCPSVTNITNNPTNITGGNSSTLKPTQQSDVSKIQTVLGNANTTPIGQVGIT
GSVSNIVNKNSMNITLPSNSLYSIHTGPGSRYLVETDPRFANYQTFISSDYMLQNLGLDP
SKTMKLVGDAFYQQKLIRDQVSQLTGKQFLGDYSSNNEEYKALMDNGTTIAKKFNLQVGI
ALTPEQMAQLTSNMVWMVEQEIQGQKVLVPVVYLAPNQTNSLRNNGAIISGENVSITADQ
DIVNQNSKITGGNINLVAGRDIKNETTTYVAKTGVHFESGNDIRTMAGQTAEITATGNLT
VNAKQDVKINGGKLSAGNNVTIEAGRNLEVGSVATGNITTRRDYLNETTANITSSIKAGE
NITMTSHQDTNLSGANIDAGKDLSLTSTGNVNITAVKDEALLDEKIGSSRNWKRTRTDDE
TVIGSNLHAGGNVTISATQSEGNKQSNKGNITIAGSNVTSDNGKITIKADKDVTIQEVKE
KHESLVQTHKKKSGFFSSKTTDTLDYSLTNQVKGSTISGDQVDINSGNNLTVKAGTVVAT
NDVKLQADNDVTLTSAQETGKEEHYKRVKKSGLFGGGGLGFTIGKESTTTTLNEQVKDEI
GTTVGSINGNVSIIAGNKVKSEGTTFVSGKDTNITGKEVTIDNTINTYDSQYKFQYKKSG
LTVSLGSGAISAGLNLTGDLERGSQVKDERLQALYGYKAAKDLKTLGKELKGNLKDGLSV
NVSLGSTKMTTEQNTHVETVNASNITAGGNVTVKATGGDVDLKATNINATNITIDAVKDL
NIESAQNKMESNTKTKSSSASIGASFGISGSFGGFDGSFNSSKGKENENSTTNTESVLNA
SGTLNLKSGNDTNIIGSQVKGKKVEVNVGDNLNIVSQQDSENYTSKNQGIGFVFNTGKVD
GKPLPSDVQGPVNKVNSVDVKGSFSSDKTNSTYTSVIEQAGIYAGKEGFDINVGKNTDLK
GAVIASDATPDKNKISTDTLTYSDIENKAEYKASSIGVNYDSKKYSPEDKENYKNQGLTP
NIGVTSSGDADSTTKSAISPGTIEIRSNPNQDLSKLSRDTNKSLNALGKIFDKKSVQERQ
ELANLFGQEVFDAIGNLKLKEGSPEKVTLDALAGGLMAQLGGGNFTSGAAGAGFNQLVQT
ELAKIKDPALHQWASVVVGGIAAQLAGDSTLTGASTAVSETRNNFFKHYYTVWWSIFIAH
TDKIKGVIAQAQIEKAGTGSEIYNLDFGDGDVLRIKTGHGYRDNHRSQTEGTVPPFTATD
KDTIIQAVTSAALTAYADHQVTGTSFPVLGESEPQTIYTNMFLFNPGTGRNEYTRVEIKV
GYNSYKGAVEVSDFYPVLRL
NT seq
8343 nt
NT seq
+upstream
nt +downstream
nt
atgtccggattttctctaaaaaagaaagcccaaaaactaactgcgtggatcaccttagta
ctatttaccctgcagccaagcttcattgccgctcaaaccgtagccgatcccaacgcagcc
aaacaaaaccggccgaccgtcgaaagcgcccaaaacggtaccccggttgtacaaatcgcc
gcgccaaccgccagcggcgtatctcataacctctaccagcaatttaacatcgaccccaaa
ggactcatcctaaacaattcctatggattatccaaaacccagctcgccggatacattcag
ggcaaccctaacctcgccggcggctccgcaagggttatcttaaacgaagtcaccagcaac
aacatcagccatctccgcggctacctcgaagtcgccggacaaagagccgacgtcatcatt
gccaaccggaacggcataatcggcaatggcttcggtttcatcaacaccaaccggggcgta
ctcacaaccggtacacccgtattcggcggcaacggcagcctcgaagcctttcgcgtaacc
ggcggccaaatcgccgtccaaggtgacggcataaacgccaccggcgccgaccgcgtcgac
ctcatcagccgggctattaccgtcaacgccggcatctgggccaaagaactaaacgcagta
accggtacgaataccgtagactacaataccctaaccacccatcccataaccggcgacagc
actgaaccccagccccaagtggcgattgacgtcagtgccttaggcggcatgtatgccaac
aaaataaaactagtcggcaccgaacaaggcgttggcgtcaacagccaaggcaccctatct
gccgatagcggcaatctcatcctaaccaacaacggccaaatcacccttgccggcaaaacc
agcgccgcaggcaggatcaacataaacgccaccgacgacataaacactcaaggcacaatc
tttgccaaacaaaacaccagcgtcaacagcaccggtaccctaaccaacaccggtaccatt
gccgcagccaataacacagaactcacagccaaaaccatagcctcgaccggaaccatagct
gccggcataaaaacagacggaaccatcgggaccgcaggcaacctaaccgtcaccgctacc
gaaacattaacggccacaggtaaaaacatcgccgggagcaacctcgccgtaacaggaaaa
gctatcgacgcaagcggagctgccacctatgccggcaacgcagctaccattaccacaacc
aatggcgacattgaccacagtggggcaacaacccaagtcaacggccaactaaccttgaac
gcaacagggacagtcaaaaacctgaaaaatacaaataaccaaacgggacaaatcaccgcg
ggaaaaatcgccatcaccgccaacgacatacaaaaccaggacggaatcatccagcaaacc
ggttccggcgataccaccctaaccgccaccggtaccatcgataacaccgcagggatcatc
gccaccaacggcacaaaccttaccgtaaaagccaatacaatcaataaccgccagggaaaa
ctccaacacgcgggaacaggaatcctggcaatacaaacaaccgatggcgtacaaaatacc
accggtacaatagccaccaatggacaagccataatcaatgctcagaatctagataatacc
caaggcactattaccgccggacaagatctgaaaatatccttaaacggcaacctaacgaat
gcaggaaccatcaccgccattaaagatgctgaaataaatgccaaagacatgaccaacaaa
accggtggaacgatcatcaccggcaacaacctgaacctagtaacaagcggcacactaacc
aaccaaggaaccatctacgcccaaggaaataccaatttgttaaacgccgataccttaacc
aacaccggcctccttgccgctgccaaagacaccaccctttccgccaacaccatatcttct
accggagtcattggttctggtctaaacagcaacggcagcgtaggcaataccggtaacctt
accataaaagccaatgccaccgttgccaccaacggacaaacactagctggcggcgacctc
actatcactggtaccgccattgatcataccggcggtaaaacttctgccggtggtacagtc
agccttaccgccaccaacggcgatatcaacaacaccggcggcgaaatccaaacacacgga
gcgttaacaatatcagtggccggcagtctcaaaaatgataaagacagccaaggtaaaacc
gctcagataaccgccgacaaaataaccgccgtagctaatagcatcagcaacaaaggcggc
accataaaacaatcaggtgcagaaaacacaaacctaacagcggcaactgccatcgacaat
accgatggcaccattgccagcaatgccgataatttcaccgtggaaaccggcattctaacc
aacaccaatgggaaaatccaacacgcgggaaccggtgcgctgacaatacaggcggccaat
accctgactaataccagcggcagcatcgccactaacggccggcaaactattcaagctcag
gcgctagataacaccaaaggtaccattgtagccaaaaagcaacttacagtaaatgcgcct
tctatcgtaaacagccaggggactattgctggtgacacaatacatatcacctcccaaacc
atcaccaacaaccaacaaggcttaatccaggcacaaaaaggcctaacagtaaaagcccaa
aacctggataaccagacaggcagtctgctaagccttgacaacagtggtgccattatcgcc
attgaccaaaccattcaaaactctaacggcgtaatcggtggcaacggggatgtaagcata
accgccgccaacctaaccagccaacagggacaagtcctggcgcaaggcaatcttaatctc
accaccagccagagaatagataacaccaatggcaagatggtatctcaacaaaatattaac
cttaaccaaaccaacgctacagtaaataacaccggcggcacgatcaatgctggtggtgaa
ctaaatgtccaggcaaatacaattaacagcacaggcggtaacctgaccgcaaccaccgat
gttaaccttaccgctcagaacctggtaaatggcacaacaacggtcggacgtgatgtcaac
atcaacgtaagtggtgactatacccaggaaagcggccaagtgcaggccaaccgggatgtt
aatattcaagtaaccggaacagcgacaaataaaggtaatattaatgccgtaaatgatgtc
aaactgactgccggaacggttaataacaatacaggtgctgttgtatctgccaataagcaa
ttaaaagtatcggcaaacgctgtcaacaacggtggcaaacttgacagcgatttggtagat
gtacaagcacaaaatgtcaacaacaccggaaccgttatcgcaaagaacctaaccatgaac
gccgataccatcaaaaacaccggcgactcggccatgctggctacaactaccgaaatgaac
cttaccgctaaaaccgcactggaaaacaaggatggcgctactatctacagcgtaggcaac
attaccatagctggtagtgacacgcgggatgaaaagggacaaccagtagatagaagtagt
tcggtgcttaatcagtcagctaatattgaggctgatggtaatattgctatatatgctaag
gatatcacgaataagaaacgagtaactgaggctggacagacggttgtttcggaagttatt
tattccaagccaattgatagggaggtatatataaattgttactcaggtggaggtgatagt
ggtttcagctggactgaaaaggactatgtcaaaaatttatttaaccccagcactgcaatt
aaattaagtgatacgggtggattagacaaccgtggtggaaggcatggaacgatttggtta
cttgggacaacagtaactgagactaattttatccaagactctcctgaaggtaaaattaca
gctggtgggaatattacactgcgaaccgataccgtaaacaataacaatagttcagttact
gctgccggtaaattggattcaactggaaagttaaataatatttcacagggacgagtgaga
ataactactcggcatttagccgatagctaccgacatcatgtaatgtactgtggtgatatg
gtctattattactataacgaaagtgacattggcgaaactaatgcagtaaagctttataga
tccactcaactccacgacgaaaacacctacgaacaattgcctggtgctaccgctatcttc
gaaggtaaaaagcaagtaatcatcaattgcccaagcgtaactaacatcacaaataatcct
acaaacattaccgggggcaattcctcaaccctaaaacctacacaacaatccgatgtctcc
aaaatccaaacagttctaggaaatgctaatacaacgccgatagggcaggtaggaataaca
ggtagtgtatccaacatagtcaacaaaaacagcatgaatataaccttgccctccaatagt
ctctattccattcacactggaccaggcagtcgttacttagtagaaacagaccctaggttt
gctaattaccaaacctttatttccagtgactatatgctgcaaaacctaggcttagatccc
tctaaaacaatgaagctggtcggcgatgccttctaccaacaaaaactcattcgtgatcaa
gttagccagttaaccggcaagcaatttctcggcgactattcctccaacaatgaagaatac
aaagccttaatggataacggtacgaccattgcgaaaaagttcaacttgcaagtcggtatt
gccctaaccccggaacaaatggcgcagcttacttccaatatggtatggatggtagagcaa
gagatacagggacaaaaagtactggttcccgtagtctacctggccccaaatcaaacaaac
agcctgaggaataacggcgctatcatctccggtgaaaatgtcagcattacggcagaccaa
gacatcgtcaaccagaacagtaaaataaccggcggcaacatcaacctggttgctggccgg
gacatcaagaatgaaacaactacctatgttgctaagacaggcgttcatttcgaatcaggt
aacgacatcagaaccatggccggacaaaccgccgaaattaccgctaccggcaatctaacc
gttaacgccaaacaagatgtaaaaatcaacggtggcaaactttccgcaggcaacaacgta
accatcgaagctggccgcaacctagaagtagggtcagtagctaccggtaatataactacc
agaagagattatctcaacgaaactaccgcaaacataaccagcagcatcaaagctggcgaa
aacataaccatgacaagccaccaggatactaatctgagcggcgctaacattgatgccggt
aaagacctgagccttacttctactggcaatgttaacatcaccgcagtcaaagacgaagca
ctgttagatgaaaaaataggttcaagccgaaactggaaacgtacccgtactgacgatgaa
acagttatcggaagtaatctccacgctggcggcaacgtcacgatttcggcaactcagtca
gaaggcaacaaacaatctaacaaaggcaatatcaccattgccggtagcaacgtcaccagc
gataacggtaaaattaccatcaaggcagataaagacgtaacaattcaagaggtcaaagaa
aaacacgaatcactcgtacagacccataaaaagaaaagtggtttcttttcctcgaaaacc
acagatactctcgactattccctgactaaccaagtcaaaggcagcaccatttccggtgac
caagtcgacatcaattccggcaacaaccttaccgtcaaagccggcacagttgtcgccaca
aacgacgtcaagctgcaagccgacaacgacgtaacccttacctccgcccaagaaaccggc
aaagaagaacactacaaacgcgtcaaaaaatccggtctatttggtggtggcggcttaggt
ttcactattggtaaagaaagcacaacaaccaccttaaacgagcaagtaaaagacgaaatc
ggtaccactgttggttccatcaacggtaatgtaagcataatcgccggcaacaaagtaaag
agcgaaggcacaacctttgtcagcggaaaagacaccaacatcaccggcaaagaagtaacc
atcgacaacactattaacacctacgacagccagtacaagttccaatacaagaaaagcgga
cttaccgtgtccttggggagtggggcaattagcgccggactcaatctcactggcgacttg
gagcgaggaagtcaggtaaaagatgaacgcctccaagccctctatggatacaaggcagca
aaagacctaaaaaccctcggaaaagaacttaaaggtaatcttaaagacggcttatctgtt
aatgtcagtcttggttccactaagatgactacggagcagaacacccacgtagagacagtc
aatgcatcaaacataacagcagggggtaacgttaccgtcaaagcaactgggggcgatgtc
gaccttaaagctacaaacatcaatgctaccaatattacaatcgacgccgtaaaagatctc
aacatcgagtcagcccaaaacaaaatggagtccaacaccaaaacaaagtcatcctccgca
tcaatcggagcatctttcggtatttcaggctctttcgggggattcgacggtagctttaac
tccagtaaaggtaaagaaaatgaaaactctactaccaataccgaaagcgtactcaacgct
agcggtacgttgaatctaaaatcaggtaatgacacaaacataattggttctcaagtcaaa
ggcaaaaaagtagaagtaaacgtcggcgacaaccttaacatagtcagccagcaggacagt
gagaattacacatcgaaaaatcaaggtattggtttcgtattcaatacgggaaaagttgat
ggaaaaccattaccttcggatgttcaagggccagttaataaagtaaactctgttgatgtc
aaaggctcatttagttcagataaaactaactcaacttataccagtgtgatagaacaagca
ggtatatacgcgggcaaagagggctttgatatcaatgtagggaaaaatacagaccttaaa
ggtgcggtcattgccagcgacgctacaccggataagaataagattagtaccgatacgctg
acttactcggatattgagaataaggcggagtataaggcgagtagcattggggttaattac
gatagcaagaaatacagtcctgaggataaagaaaattataaaaatcaaggtctgacgcct
aatatcggggtaacatcttctggagatgctgatagtacaactaagtcggctatttcacct
ggaaccattgaaatcagaagcaatccaaatcaagatttatcgaaacttagtcgagatact
aataaaagtttaaatgctttaggtaagatatttgataagaagagcgttcaagaacgacaa
gagctagcgaatttatttggacaagaagtttttgatgctattggtaatctaaaattaaaa
gaaggtagcccagagaaagttactcttgatgccttggcgggtggcttaatggcacaatta
ggcggggggaactttacctcaggtgctgcaggggcaggatttaatcaattagttcaaact
gaattagctaagattaaagatccagctttacatcagtgggctagtgtggttgtaggaggg
atagctgcccagttagctggggatagcactttgacaggggcaagtacggcagttagtgag
acaaggaataatttctttaagcattactacacagtatggtggagtattttcatagcacat
acagacaaaattaaaggggttattgctcaagcacaaattgaaaaagcaggtactggctcg
gaaatatataatttggattttggtgatggtgacgttttgcgaataaaaacgggccatggt
tatcgagataatcatcgttcacagactgagggtacagttccgccgtttacagcaaccgat
aaagatactattatccaagccgtcacaagtgcagctttaacagcatatgcggatcatcaa
gtaacgggcacgagctttcctgtattaggagaaagtgaaccccaaacaatatatactaat
atgttcttatttaacccaggaacgggaagaaacgaatatactcgagttgagattaaagtg
ggatataatagttataaaggtgctgttgaagtatcagatttttatcctgtattaagactt
taa
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