Sphingomonas rhizophila: H9L12_04390
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Entry
H9L12_04390 CDS
T07014
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
srhi
Sphingomonas rhizophila
Pathway
srhi03030
DNA replication
srhi03430
Mismatch repair
srhi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H9L12_04390 (dnaE)
03430 Mismatch repair
H9L12_04390 (dnaE)
03440 Homologous recombination
H9L12_04390 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srhi03032
]
H9L12_04390 (dnaE)
03400 DNA repair and recombination proteins [BR:
srhi03400
]
H9L12_04390 (dnaE)
Enzymes [BR:
srhi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
H9L12_04390 (dnaE)
DNA replication proteins [BR:
srhi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
H9L12_04390 (dnaE)
DNA repair and recombination proteins [BR:
srhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
H9L12_04390 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
DUF655
HHH_3
COE1_HLH
tRNA_anti-codon
Rep_fac-A_C
Motif
Other DBs
NCBI-ProteinID:
QNN65792
UniProt:
A0A7G9SD67
LinkDB
All DBs
Position
893839..897288
Genome browser
AA seq
1149 aa
AA seq
DB search
MPGPYVPLRIFSCFTMLEGAIEPKAIAEHAAKLGFPAAALTDRNGLYAAMPFGDACFKAG
VQPIVGAMLGVSRPGTIGPAGALDWLALLAQDQQGYDNLCRLVSAAHLDRPIHEPPHVTF
EAVAESSAGLIALTAGGEGALARLLSDGQDSKAEAYAELLQSTFGDRLYVELSRRGDAVE
EAAEARLIAMAMRRGLPLVATNPACYAEPGFHAAHDAMLCIAASTQIDHPDRQRSSPDAW
LKSSSMMAELFADLPEAITNTSVVAQRCAVAAPSRRPILPRLSDDEDETLRREAHAGLER
RLEGRDEADKARYRERLDFEIDVITRMGFAGYFLIVADFIQWAKANDIPVGPGRGSGAGS
AVAWSLLITDLDPIALDLLFERFLNPERVSMPDFDIDFCETHRDKVIAYVQRKYGRDKVA
QIITFGRLKARAVLKDTGRVLQMPYGQVDRLAKLVPNHPTDPWTLERALEGVGDLRREYQ
GDEDVKRLMDLAMKLEGLPRHSSTHAAGVVIGDRPLSELVPLYRDPRSDMPVTQFDMKYV
EGAGLVKFDFLGLKTLSVLKEGQRLLAQRGIEIDYSALPWDDPAIYELLQRGDTVGVFQL
ESEGMRRTLSAVRPTSFGDVIALVSLYRPGPMDNIPMFGDRKNGRQELAYPHPMLEGVLK
ETYGIFVYQEQVMQAAQVLAGYSLGEADLLRRAMGKKIKSEMDAQRARFIEGAARNAISE
AKANELFDLIDKFAGYGFNKSHAAAYALVAYHTAWLKAHHPAEFFAASMSFDIHQTDKLA
LFVEDIARSGLECLPPCINASEAAFSVEDGKVRYALGALKGVGERAMESLVEERKANGSF
KSLDDFAARIDPKLLNRRQLESLAGAGAFDSLNPDRAQVFAAAEMLLAHAASAHDQRTSG
QHGLFGGADEADVSAIRLPRGPQWTLAERMAAERDSFGFYFSAHPVDAQKHLLVAHKVKS
FADLAEMSVPSDGNRAQTTMAGLVESTRWATSAKGRRYMVATISDASGQYMATVFDEEAT
AALEAAAKGGQCGLLGVELDRRPGDETPRVTVKKFQSLDTLARKTRLQLALRIADPAQVA
AVTRELEAAEGGNGFVRATVRLADGREATLLLGRQYTLDADLAVRLGRILGENAVELSAQ
EPPRLALVG
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcccggcccctatgttccgcttcgaatcttctcctgcttcaccatgctcgaaggggcg
atcgagccgaaggcgatcgcggagcacgccgccaagctgggctttcccgccgccgccctg
accgaccgcaatggcctgtacgcggcgatgccgttcggcgacgcctgcttcaaagccggg
gttcagccgatcgtcggggcgatgctgggcgtttcgcggcccgggacgatcgggccggca
ggtgcgctcgattggctggcgttgctggcgcaggaccagcaggggtacgacaatctgtgc
cggctggtgtccgctgcgcacctcgaccggccgatccacgaacccccgcacgtgacgttc
gaagcggtcgcagaatcctccgccggcttgatcgcgctgacggcgggcggggagggcgcg
ctggcccggttgttgtccgatgggcaggattcgaaagcggaagcctacgccgagctgctc
caatcgacgttcggcgaccggctgtacgtcgagttgtcgcggcgcggcgatgcggtcgaa
gaagcggccgaggcgcggctgatcgcgatggcgatgcggcgcgggctgccgctcgttgcg
accaacccggcctgctacgccgaacccggtttccatgccgcgcacgacgccatgctgtgc
atcgcggcgtcgacccagatcgaccatcccgatcgccagcgctcgtcgcccgacgcctgg
ctcaaatcctcgtccatgatggcggagctgttcgccgacctgcccgaggcgatcaccaac
acgtccgtggtggcgcagcggtgcgcggtcgcagcgccgtcgcgccggccgatccttccg
cgcctcagtgatgacgaggacgagaccctgcgccgggaagcgcacgcgggcctggaaaga
cgtctcgaagggcgcgacgaggccgacaaggcgcggtaccgggagcggctcgacttcgag
atcgacgtcatcacccgaatgggtttcgccggctacttcctgatcgtcgccgacttcatc
cagtgggcgaaagccaacgatattcctgtgggcccagggcgtgggtcgggcgcgggaagc
gcggtggcgtggtcgttgcttatcaccgacctcgacccgatcgcgctcgacctgctgttc
gaacggttcctcaatcccgaacgcgtgtcgatgcccgacttcgacatcgacttctgcgaa
acccatcgcgacaaggtgatcgcgtacgtccagcgcaaatatggccgtgacaaggtggcg
cagatcatcaccttcgggcgcctcaaggcgcgcgccgtgctaaaggacaccggccgggtg
ctgcagatgccgtacggccaagtcgaccggctggcgaagctggtgcccaaccatccgacc
gatccgtggaccctggaacgcgcgctggagggcgtcggcgaccttcggcgcgagtatcaa
ggcgacgaggacgtcaagcggctgatggacttggcgatgaagctggaaggcctgccacgc
cacagctcgacccatgccgcaggcgtcgtgatcggcgaccgaccgcttagcgagttggtg
ccgctataccgcgacccgcgctccgacatgccggtgacccagttcgacatgaaatatgtc
gagggcgccggtttggtgaagttcgacttccttggcctgaaaacgctatcggttctcaag
gaggggcagcggctgctcgcacaacgcggtatcgagatcgactattccgcgctcccctgg
gacgaccctgcgatctacgagctgctccagcgcggcgacacggtcggtgtcttccagctg
gaatccgaaggcatgcgcagaacgctgtctgccgtgcgtccgaccagttttggcgacgtc
atcgcgctggtctcgctctaccgcccgggcccaatggacaatatcccgatgttcggcgac
cgcaagaacggccgtcaggagctcgcctatccgcacccgatgcttgagggagtgctcaag
gaaacctacggcatcttcgtctaccaggaacaggtgatgcaggcggcgcaggtgctggcc
ggctacagcctgggcgaggccgaccttctccgccgcgcaatgggcaagaagatcaagagc
gagatggacgcgcaacgtgcgcgatttatcgagggcgcggcccgcaacgccatttccgag
gccaaagccaacgaattgttcgacttgatcgacaagttcgccggctatggcttcaacaag
agccatgccgcggcttatgcgctggttgcctatcacaccgcttggctgaaggcgcatcac
ccggccgagttcttcgccgcgtcaatgagcttcgacatccaccagaccgacaagctggcg
ctgttcgtcgaggacatcgcacggtcggggctcgaatgcctgccgccctgcatcaacgcg
tccgaagcggccttctcggttgaggacgggaaagtgcgttacgcgctgggggcgctcaag
ggcgtcggcgagcgggcgatggaatcgctcgtcgaggagcggaaggccaacggttccttc
aagagcctcgacgacttcgcggcgcggatcgatcccaagctgctcaatcggcggcagctg
gagagcctagccggggcgggggcgttcgactcgctcaatccggaccgggcgcaggtgttc
gcggcggccgaaatgctgctcgcccatgcggcgtcggcgcatgaccagcggaccagcggg
cagcacggcctgttcggcggggcggacgaggcggacgtttcggcgatccgcctgccgcgc
ggaccgcaatggacgctggctgagcggatggcggcggagcgggattctttcggcttctat
ttttccgcccacccggttgacgcgcagaagcacctgctggtggcgcacaaggtgaaaagc
ttcgccgatctcgccgagatgagtgtgcctagcgacggcaaccgcgcacagacgacgatg
gcggggctggttgagtctacccgctgggcgacgtcggccaagggccgccgctacatggtg
gcgacgatcagcgacgcgtccggccagtatatggcgacggtgttcgacgaggaggcgacc
gcggcactggaggcagcggccaagggcggccagtgtgggctgctgggcgtagaactcgac
cgacggccgggcgacgagactccgcgcgtgaccgtcaagaaattccagtcgctcgacacg
ctggcacgaaagacgcggctgcaactggcgctgcggatagcggatccggcgcaggtagcg
gcggtgacccgggaactcgaggcggcagagggcggcaacgggttcgttcgtgcgacggtc
cggctggccgatgggcgcgaggcgacactactgctgggacggcaatacacgctggatgcg
gaccttgcggtccgactggggcgcattctcggtgaaaatgccgtcgagctctctgcgcag
gagccgccgcggctggcgctggtcggctag
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