Sphingomonas rhizophila: H9L12_08160
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Entry
H9L12_08160 CDS
T07014
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
srhi
Sphingomonas rhizophila
Pathway
srhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L12_08160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srhi03019
]
H9L12_08160
03009 Ribosome biogenesis [BR:
srhi03009
]
H9L12_08160
Enzymes [BR:
srhi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
H9L12_08160
Messenger RNA biogenesis [BR:
srhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H9L12_08160
Ribosome biogenesis [BR:
srhi03009
]
Prokaryotic type
rRNA processing factors
H9L12_08160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QNN66245
UniProt:
A0A7G9SEH0
LinkDB
All DBs
Position
1595954..1598533
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AA seq
859 aa
AA seq
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MLIDARHPEETRVAVAKGNRIEEFDFESEEHKQLKGNIYLAKVTRVEPSLQAAFVDYGGN
RHGFLAFSEIHPDYYQIPKADRDALLREEAEHAAEEERLRNEQYASDDDVDEDADADSEA
DEAEGESSDDEAHEVGTGSARSPVDESAADELRQKRQNLRRRYKIQDVIQRRQVLLVQVV
KEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNGSDRKRLKSIMSDLNLPSTM
GLIVRTAGLSRTKVEIKRDFDYLARLWDEVRERTLASSAPALIYRDSDLIKRAIRDLYHR
EIDEVVVEGEDGYKAARGFMKLLMPSHVRRVSAYSDPTPIFQRYGVEDQLSAMYQPVVQL
KSGGYLVINPTEALVSIDINSGRSTREHNIEQTAYATNLEAAAEIARQLRLRDMAGLVVI
DFIDMEQSSHVRKVEKAMKEALKNDRARIQVGRISSFGLMEMSRQRLRTGVLEASTKACP
HCEGTGLMRTASSAGLSALRIIEDEAARGRGDRILLRAGREAAIYVLNKKRAELAEIEDR
YGVTVEIAIDEAFEGARMSVESSGPRPDPRRRPVPAPIVEEDEDDLPIEDEVDEEEEEET
EERSERGRGDRDGDGEERGGRRGRRRRRRGGRGRNRRDEETGDREDGEALSDEEPVGEEA
DTDAAEQADSENGERSRSRRGRRGGRGRRGRGGDRPETEAAVADDAVDAEEAAVAEVAAP
EAESPGEEAPADDKPKARRRPRARKTAEATPAEAVQAPTAEAPAAEAMAEETPAKPKRSR
AKKAAVPAETAAETVAEEPAPAPAKKTRSRKAAAATATAEPAPEPAAPAAEPAAENVSAE
NENEDGSPRRGGWWQRTFG
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcgacgcgcgccacccggaggaaacccgggtcgccgtcgccaagggaaatcgg
atcgaggaatttgatttcgagtccgaagagcacaagcagctcaaggggaatatctatcta
gccaaggtcacccgcgtcgaaccgtcgcttcaggcggcgttcgtcgattacggcggcaat
cgccatggcttcctcgcgttcagcgaaatccaccccgactattaccagattccgaaggca
gaccgcgacgcattgctgcgcgaagaggccgagcatgccgccgaggaagagcggcttcgc
aacgagcaatatgcctcggacgacgacgtcgacgaggatgccgacgcggattccgaagcc
gacgaggccgagggcgaatcgagcgacgacgaggcgcatgaagtcggcactgggtcggcc
cgctcgccggtcgacgaaagcgccgccgacgagcttcgccagaagcgccagaaccttcgc
cgccgctacaagattcaggacgtcatccagcgccgccaggtgttgttggtccaggtcgtc
aaggaagagcgcggcaacaagggcgccgcgctgacaacctacctcagcctcgccggccgt
tactgcgtcctgatgcccaacacttcgcacggcggcgggatcagccgcaagatttccaac
ggctccgaccgcaagcggctgaagtcgatcatgtcggatctgaacctgccgtcgacgatg
ggcctcatcgtccgcacggccgggctgtcgcggaccaaggtcgagatcaagcgcgatttc
gactatctcgcgcggctgtgggacgaagtgcgcgagcgcaccctcgcctcctccgcgccg
gcgctgatctatcgcgacagcgacctcatcaagcgcgccatccgcgacctttaccaccgc
gaaatcgacgaggtcgttgtcgaaggcgaggatggctacaaggcggcgcgcggcttcatg
aagctgttgatgcccagccacgtgcgccgggtcagcgcctattccgacccgacgccgatc
ttccagcgctatggcgtcgaggaccagctgtcggcgatgtatcagccggtggtccagttg
aagagcggcggatacctggtcatcaacccgaccgaggcgctggtcagcatcgacatcaac
tcgggccgctcaacgcgcgagcacaatattgaacagacggcctacgccaccaacctcgag
gccgcggccgagatcgcgcgccagctccgcctgcgcgacatggcgggcctggtcgtcatc
gacttcatcgacatggaacagtcgtcccatgtgcggaaggtcgagaaggcgatgaaggaa
gcgctgaaaaacgatcgcgcccgcatccaggtcggtcgcatctccagcttcggcctgatg
gaaatgagccgccagcggcttcgcaccggcgtgctcgaagcgtccacgaaggcctgcccg
cattgcgagggcaccggcctgatgcgcaccgcctcgtcggccggcctgagcgcactgcgc
atcatcgaggacgaggccgcgcgcggccgcggcgatcgaatcctgctccgcgcagggcgc
gaggcggcgatctatgtgctgaacaaaaagcgcgccgaactggccgagatcgaggatcgc
tatggcgtgacggtcgagatcgccatcgacgaggcgttcgagggcgcccgcatgagcgtc
gagagcagcgggccgcgtcccgacccgcgccgccgccccgtccccgcgccgatcgtcgag
gaagacgaggacgatctgccgatcgaggacgaggtggacgaagaggaagaggaagaaacg
gaagagcgctccgagcgtggccgtggcgaccgcgatggcgatggcgaagagcgcggcgga
cgccgtgggcgccgccgccgccgccgtggcggacgtggccgcaaccgccgcgacgaggaa
accggcgaccgcgaggatggcgaggctctgtccgacgaggaacccgttggcgaggaagcc
gataccgatgcggcggaacaggccgacagcgagaatggcgaacgcagccgctcgcgccgg
ggacgtcgcggtggacgcggccgtcgcggtcgcggtggcgatcggcccgagacggaagct
gccgtcgccgacgacgcggtggatgcagaggaagctgcggtcgccgaggtagcggctccc
gaagccgaatcgccgggcgaggaagcaccggccgacgacaagcccaaggctcgccgccgt
ccgcgtgctcgcaagaccgccgaggcgacgccggcggaggccgtccaggcgccaaccgcg
gaagctccggccgccgaagccatggctgaggaaaccccggccaagcccaagcgtagccgc
gccaagaaggcggctgtgccggccgagacggccgccgagacggttgccgaagagcctgcg
cccgcaccggccaagaagacccgcagccgcaaggccgcagccgcgacggcgaccgccgaa
ccggccccggagcctgccgcaccagccgcggagcctgccgcggaaaacgtatcggccgaa
aacgagaacgaggacggttccccgcgtcgcggcggttggtggcagcggacgttcgggtaa
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