Sphingomonas rhizophila: H9L12_10825
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Entry
H9L12_10825 CDS
T07014
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
srhi
Sphingomonas rhizophila
Pathway
srhi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
srhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
H9L12_10825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srhi03019
]
H9L12_10825
03009 Ribosome biogenesis [BR:
srhi03009
]
H9L12_10825
04131 Membrane trafficking [BR:
srhi04131
]
H9L12_10825
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
srhi04147
]
H9L12_10825
Messenger RNA biogenesis [BR:
srhi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
H9L12_10825
Ribosome biogenesis [BR:
srhi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
H9L12_10825
Membrane trafficking [BR:
srhi04131
]
SNARE
SNARE associated proteins
Others
H9L12_10825
Autophagy
Aggrephagy
Other aggrephagy associated proteins
H9L12_10825
Exosome [BR:
srhi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
H9L12_10825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_5
CDC48_2
AAA_22
AAA_33
AAA_2
AAA_14
TIP49
IstB_IS21
nSTAND3
NPHP3_N
AAA_28
Vps4_C
AAA_18
AAA_24
RNA_helicase
Mg_chelatase
AAA_3
AAA_11
AAA_7
Zeta_toxin
DUF815
AAA_30
AAA_17
Sigma54_activat
AAA_19
ABC_tran
TsaE
NB-ARC
Parvo_NS1
ATPase
bpMoxR
MazE_antitoxin
CPT
Motif
Other DBs
NCBI-ProteinID:
QNN64742
UniProt:
A0A7G9SA67
LinkDB
All DBs
Position
2118342..2120648
Genome browser
AA seq
768 aa
AA seq
DB search
MADVETMTRRLQVANLPPADSGRGVARLPLKLMNELGLQEGDVIEIVGKRTTAARAIRPY
GDDEGLNIVRLDGLQRVNAGVGSGDFVEINKVNSKPATKVVFAPASNNVRLQGSSEALRR
SFEGRPFTEGDIVAIAGHQRVNADMPEHIRQMLNAPAFALQEVRLTVVSTTPKGIVHLDA
GTSVELLPEFTKRDGERRADVTYDDLGGMGSTIDALREMVELPLRHPELFQRLGVDPPKG
VLLHGPPGTGKTRLARAVANESEANFFHIAGPEVMGSAYGESEKKLRELFEKAAAAAPSI
IFIDEIDSIAPKRDQVSGEAEKRLVAQLLTLMDGLEPRQNLVVIAATNRPEALDEALRRP
GRFDREIIIGVPDEAGRREIFGIHTRGMPLAPNVDLDALARRTYGFVGADIAALTREAAL
EAVRRIMPKIDLQEVSIPPEVLDALSVESSDFDDALKRVQPSAMREVMVQMPNIGWDDIG
GLDEARDRLREGVELPLKHPGSFKRLGIRPAKGFLLYGPPGTGKTLLAKAAARESQANFI
ATKSSDLLSKWYGESEQQIARLFARARQVAPTVIFIDELDSLVPARGGGLGEPQVTERVV
NTILAEMDGLEELQNVVVIGATNRPNLIDPALLRPGRFDELIYVGPPDTAGRRRILAIHT
EGMPLAKDVDLQLMARNTERFTGADLEDLVRRAGLTALRRGLDEAQVTMSDFQTALEETR
ASVTEEMLDDYAKIRDTLKSDAVRPVGGIGFVLPGTLRPRGGNEGKGS
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgtcgaaacgatgacccggcgcttgcaggtcgcgaacctgccgcccgccgac
agcggccgcggagtcgcccgactgccgttgaagctgatgaatgaactcggcctccaggag
ggcgacgttatcgaaatcgtcggcaagaggacgaccgccgcccgggcgattcgtccctac
ggcgatgacgaaggcctcaatattgttcgcctggacggtctgcagcgggtcaacgccgga
gtaggatcgggcgatttcgtcgagattaacaaggtcaactcaaagccggcaacgaaggtt
gtcttcgcacctgcttcgaacaacgtccgcctgcagggctcctccgaggcgctccgccgc
agcttcgaggggcggcctttcacagagggcgacatcgtggccatcgccggtcaccagcgc
gtcaacgccgacatgcccgaacatatccgccagatgctgaatgcgccggccttcgccctg
caggaagtgaggctgaccgtcgtctcgacgaccccgaagggcatcgtccatctcgatgcg
gggaccagcgttgaactgcttcccgagttcaccaagcgggatggcgagcgccgggccgac
gtcacttatgacgaccttggcgggatgggctcgacgatcgacgccctgcgcgaaatggtc
gagctgccgctgcgccatcccgagcttttccagcgcctgggcgtagacccgcccaagggg
gtcctgctccacggcccgcccgggaccggcaaaacccgcctggcgcgcgcggtcgccaac
gagagcgaagccaacttcttccacatcgccggccccgaagtgatgggcagtgcatatggc
gagtcggaaaagaagctacgcgaactgttcgagaaagcagccgccgcggcgccgtcgatc
atcttcatcgacgaaatcgattcgatcgccccgaagcgtgaccaggtttccggtgaggcg
gaaaagcggctcgtcgcacaactgctgacgctgatggacgggctcgagccccggcagaac
ctcgtcgtcattgcggccaccaatcggcccgaggcgttggacgaggcgcttcgtcggccg
ggacgcttcgaccgcgagatcatcatcggtgttcccgacgaggccggccggcgtgagatc
ttcgggatccacacgcgcgggatgccgttggcgccgaacgtcgatctcgacgcgctggcc
cgccggacctacggcttcgtcggggccgatattgccgcccttacccgcgaagctgcgctt
gaggcggtccgccgcatcatgccgaagatcgaccttcaggaggtttccatcccgcccgag
gtcctcgacgccctgtccgtcgagtcttccgatttcgacgatgcgctgaagcgggtgcag
ccgtcggccatgcgagaggtcatggtccagatgcccaacatcggctgggacgatattggg
ggcctcgacgaagcccgcgaccggcttcgcgagggtgtggagcttcccctcaagcacccc
ggctcgttcaagcggctgggcatccgtccggccaaggggttccttctctacggtccgccg
gggactgggaaaacgctgctggcaaaggccgcggcgcgggaaagccaggctaacttcatc
gccacgaaatcgagcgacctgctgagcaaatggtatggcgagagcgaacagcagatcgcc
cgcctgttcgcccgcgcccgccaggtcgcgccgaccgtcatcttcatcgacgagttggac
agccttgtcccggcgcgcggcggaggcctcggcgagccgcaggtgaccgagagggtggtc
aacaccatccttgccgaaatggacgggctggaggaattgcagaacgtcgtcgtgatcggc
gccaccaaccggcccaacctgatcgatcccgccttgctccgccccggccggttcgacgaa
ctaatttacgtcggcccgcccgacaccgccggtcgccgccggatcctcgcgatccacacg
gaaggcatgccgctcgccaaggatgtcgacctgcagctaatggctcgaaacaccgagcgc
ttcaccggtgcggaccttgaggatctggtgcgtcgtgccggcctgacggcgctccgccgt
ggcctggacgaggcccaggtgaccatgtccgacttccagacggcgcttgaggaaacccgc
gcgtcggtcacggaggagatgctcgacgactacgcgaagatacgcgacacgctaaaatcg
gacgccgttcgcccggtcggcgggatcgggtttgtcctgccgggcacgcttcgaccgcgc
ggcgggaacgagggcaagggcagctag
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