Sphingomonas rhizophila: H9L12_12015
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Entry
H9L12_12015 CDS
T07014
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
srhi
Sphingomonas rhizophila
Pathway
srhi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srhi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L12_12015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srhi03019
]
H9L12_12015
Enzymes [BR:
srhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H9L12_12015
Messenger RNA biogenesis [BR:
srhi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9L12_12015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_19
AAA_22
DUF6362
Utp25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QNN64925
UniProt:
A0A7G9SAQ0
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All DBs
Position
2344347..2345924
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AA seq
525 aa
AA seq
DB search
MTQFTDLGLSQPLLDALASKNYTQPTPIQAQAIPTVLTGRDLLGIAQTGTGKTAAFMLPS
LDRLATPRVHPIPKRVRMLVLAPTRELASQIADSARTYAKNVHLTVDVVFGGTAPMKSVR
AVARGLDVLVATPGRLLDLVDQRAIDLSRLEILVLDEADQMLDLGFIHALKRIVQIVPKQ
RQTLFFSATMPRAIKQLADTYLTNPAEVSVTPAATTVERIDQTVTFVNQAEKAALLTLFL
QSTEIERALVFSRTKHGADKIVRQLAASGIASAAIHGNKSQPQRERAIAAFKSGETPVLI
ATDIAARGIDIPGVSHVVNFDLPDVPEQYVHRIGRTARAGADGTAIAFCSPDERVNLKDI
EKTTRQRIDQKPLPEGFVAAAAALKALKLPAKTEEAVRGRTSGSGRRDQPRRPKATAELR
RFGERGDRQPRRDEARPPQARRDEARPQQVRRDDSPRSFDQFGNRQEQQRSGPSALRQDR
GPRSDGQRHPQRAGAHPAHRPEGGKRPFGGGRGRPGSRRPNRAQG
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
ttgacccaatttaccgaccttgggctctcgcagcccctcctcgatgcgctcgcctcgaag
aattacactcagccgacgccgatccaggcgcaggccatcccgaccgtgctgaccggccgc
gacctcttgggcatcgcccagaccggcaccggcaagacggcggcgttcatgctgccgtcg
ctcgaccggctggcgaccccgcgtgtccatcctatcccgaagcgggtgcggatgctggtg
cttgcgccgacccgcgagctcgcctcgcagatcgcggacagcgcccgcacctatgccaag
aacgtccacctcacggtcgacgtcgtgttcggcggcaccgcgccgatgaaaagtgtccgc
gccgtggcgcgtggtctcgacgtgctcgtggcaacgccgggccgtctgctcgacctggtc
gaccagcgcgcgatcgacctcagccgcctcgagatcctcgtgctcgacgaggcggaccag
atgctcgaccttgggttcatccatgcgctgaagcggatcgtccagatcgtcccgaagcag
cgccagaccctgtttttctcggcgaccatgccgcgcgccatcaagcaactggcggacacc
tatctgaccaaccccgccgaagtatcggtgaccccggccgcgacgacggtcgagcggatc
gatcagacggtcacgttcgtcaaccaggccgaaaaagcggcgctgctgacgctgttcctg
cagtcgaccgagatcgagcgtgcgctggtgttcagccgcaccaagcatggcgccgacaag
atcgtccgccagctcgccgcgtcgggcatcgccagcgccgccatccacggcaacaagtcg
cagccgcagcgcgaacgggcgatcgccgcgttcaagtcgggcgagacgccggtgctgatc
gcgaccgacatcgccgcgcgcgggatcgacattccgggcgtcagccacgtcgtcaatttc
gaccttccggacgttccggagcaatatgtacaccgcatcggccgcaccgcgcgtgccggc
gccgatggcaccgcgatcgccttctgctcgccggatgagcgggtcaatctcaaggacatc
gagaagaccacccgccagcggatcgaccagaagccgctgccggaaggcttcgttgccgcc
gctgctgcgctcaaggcgctcaagctgccggccaagaccgaggaagctgttcggggtcgc
acgtcgggcagcggtcgccgtgaccagccgcgccgccccaaggcaacggccgaattgcgg
cgcttcggcgagcgcggcgatcgccagccgcgccgcgacgaggcgcgtccgccgcaggcc
cgtcgcgacgaagcccgtccccaacaggtgcgtcgtgacgacagcccgcgtagcttcgac
cagtttgggaatcggcaggagcagcagcgttccgggccttccgcactgcggcaggaccgt
ggtccgcgcagcgatgggcagcgccatccgcagcgggccggcgctcatccggcgcatcgc
ccggagggcggcaagcgcccattcggcggtggtcgtggccgtcccggtagccggcgtccc
aaccgcgcccaaggctga
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