Spirosoma rhododendri: HH216_01795
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Entry
HH216_01795 CDS
T08048
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
srho
Spirosoma rhododendri
Pathway
srho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH216_01795 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srho03019
]
HH216_01795 (recQ)
03400 DNA repair and recombination proteins [BR:
srho03400
]
HH216_01795 (recQ)
Enzymes [BR:
srho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HH216_01795 (recQ)
Messenger RNA biogenesis [BR:
srho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HH216_01795 (recQ)
DNA repair and recombination proteins [BR:
srho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HH216_01795 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
HTH_40
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QJD77293
UniProt:
A0A7L5DJJ6
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All DBs
Position
463691..465856
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AA seq
721 aa
AA seq
DB search
MLLTDAPGADAQGSATTTLQTPADYLKQYYGYDRFRPMQEDIVRSIVGGRDTVVLMPTGG
GKSVCFQIPALMLPGLTVVISPLIALMKDQVGALHMNGIPAAYYNSTQTSREQHAIEDDC
LKGKLKLLYVSPEKLLTEAFFEFLKHTNLSLFAIDEAHCISSWGHDFRPEYTQLHVLKEQ
FPTVPTIALTATADKLTRADIATRLGMVDPAVFISSFNRTNLSLKVMPGQNRIQQIIRLL
QQKPNTSGIIYCLSRKSTESLAAKLQEKGFNAAFYHAKMDPADRARTQEAFLRDDVRIMC
ATIAFGMGIDKSNVRWVIHYNMPKNIESFYQEIGRAGRDGADAQTVLFYSFADVATYKDM
LAENNPANLGLQLAKLERMQQYADAHTCRRQILLSYFSEDLPEPCGNCDVCRDPRVTFDG
TILAQKALSAMVRTGERVPMNLLVDILRGSRSQAVMQGGYDQIKTYGAGRDLRFEEWRSY
IHQLINIGVIEVAYDQHYALRRGILADAVLKNGRKIELVRPDDAPKPAPVEKPKTKTEVN
RDELFEQLRTLRKQLADEQNVPPYVIFTDTTLEDMARQKPTTPDALRNVSGVGERKLQLF
GRQFLATITNYVRGRVQAGEKPKGSTQLQTLDLFNQGMTIDEIAVERTLKSSSIASHLVQ
LARAGYDIDLVSLLDPIERREIEKAIREVGLEEGRLKPVFEYLNGRYDYAKLTLVVGLME
Q
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgctgcttaccgatgcaccgggggccgacgcacaggggtcggctaccacgaccctgcaa
acgcccgccgattacctgaaacaatactacggctacgaccgcttccggcccatgcaggaa
gacatcgtccggtcgatagtgggcgggcgcgacacggtggtgctcatgccgacgggcggg
ggcaaatcggtttgttttcagattccggccctgatgctgcccggcctgacggtggttatc
tccccgctgattgccctgatgaaagatcaggttggcgcgctgcacatgaacggtattccg
gcggcttattacaacagcacccagaccagccgcgagcagcacgccatcgaagacgactgc
ctgaagggtaagctcaaactgctgtatgtgtcgcccgaaaagctgctgaccgaagcgttt
tttgagtttctgaaacacacaaacctgtcgctcttcgccatcgatgaagcgcactgtatc
tcgtcgtggggtcacgatttccggccggaatacacgcagctgcacgtgctgaaagagcag
ttccccacggtaccaaccattgccctgaccgcgacagccgacaagctgacccgcgccgac
attgccacccggctcggcatggtcgatccggcagtgtttatctcgtcgttcaaccggaca
aacctcagcctgaaggtgatgccggggcagaaccgcattcagcagatcatcaggctgttg
cagcagaagcccaacacgtcggggattatttactgcctgagccgcaaatcgaccgaatcg
ctggcggccaagttgcaggaaaaaggcttcaacgcggctttctaccacgccaaaatggac
cccgccgaccgtgcccgcacgcaggaagcgtttctgcgcgacgacgttcggattatgtgc
gcgacgattgccttcggtatgggcatcgacaagtcgaacgtgcgctgggtgatccattac
aacatgcccaaaaacatcgagagcttctaccaggagatcgggcgggccggacgcgacggg
gccgatgcgcaaacggtattgttctacagtttcgccgacgtggcgacgtacaaggatatg
ctggccgaaaacaacccggctaacctggggctgcaactcgccaagctggagcggatgcaa
cagtacgccgacgctcacacctgccgccgtcagattctgctctcgtatttctcggaagat
ctgcccgaaccctgcggcaactgcgacgtctgccgcgacccgcgcgtaacgttcgacggg
acgatactggcccaaaaggcgctctcggcgatggtgcggacgggcgaacgcgtgccgatg
aacctgctggtcgacattctgcgcggctcacggagtcaggccgtcatgcagggtggctac
gatcagatcaaaacctacggcgcgggccgcgacctccgcttcgaggagtggcgcagctat
attcatcagcttatcaacatcggcgtaatcgaggtggcctacgatcagcactacgccctg
cgccggggtatcctggccgacgccgtattgaagaacgggcgcaagatcgaactcgtccgg
cccgacgacgcgccgaagcccgcaccggtcgagaaaccaaagactaaaacggaagtcaac
cgcgacgagctgttcgagcaactgcgtaccctgcgcaaacaactcgccgacgagcagaac
gtgccgccctacgtcatctttaccgatacgacgctggaagatatggcccggcaaaaaccc
acgacgcccgacgcgctgcgcaacgtcagcggggtaggcgaacgcaagctgcaactgttc
gggcggcagtttctggcaacgatcaccaactacgtccgggggcgggtgcaggccggtgaa
aagcccaaaggatcgacccagttacagacgctcgacctgttcaatcagggcatgacgatc
gacgagattgcggtcgaacgtacccttaaaagcagctcaattgcgagtcatctggtgcag
ctcgcccgcgcgggctacgacatcgatctggtatccctgcttgacccgattgaacggcgc
gagattgaaaaagccatccgcgaagtagggctggaagaagggcgtttaaagcccgttttt
gagtacttaaacggtcgttacgactacgccaagctcacgctcgtcgtcggcctgatggag
cagtag
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