Spirosoma rhododendri: HH216_05610
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Entry
HH216_05610 CDS
T08048
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
srho
Spirosoma rhododendri
Pathway
srho03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HH216_05610 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srho03400
]
HH216_05610 (mfd)
Enzymes [BR:
srho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HH216_05610 (mfd)
DNA repair and recombination proteins [BR:
srho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HH216_05610 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QJD77955
UniProt:
A0A7L5DIR3
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All DBs
Position
complement(1419379..1422732)
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AA seq
1117 aa
AA seq
DB search
MKPAELVGLYANDSFIQILSEPFGRKPTGDPQRLQIKGLAGSLDAVFASAIVKSVGGNHL
FVMTDRDEAAYFFNDLQHLLEREVLLFPMSYKKPYLYEEVENANVLMRAEVLNKLNPAPK
DGLLMVTYPEALSEKVINKRSLQANTLTIRVGEKIDTNFVADLLLTYEFEKTDFVYEAGQ
FSVRGGIIDVFSFASEYPFRIDLFGDEVESIRKFNPETQLSTDPVDFINVIPNIQTKLIE
ETRDPFFSFLPDSTTIWAKDVEFTLEIIEKCYEKAEQSFETILASSGGIQVISDPGDLFE
TRRTFLNQVKEFRTVEFGRKFYFKTDTRQQYQSKPQPSFNKDFKRLVDTLGDNQAKGYTN
VIAAESFKQLDRLRSIFEELDPHLTFQPLNIGLREGYIDDSLKIVCFTDHQLFDRYYRFK
VQDKFTKSKALTLRELKTLQPGDYVTHIDHGIGRFAGLEKVDNAGNQQEAIRLIYRDNDI
LLVSIHSLHKIAKYTGREGSPPPMSKLGSQEWEQKKSRIRKQVKDIARELIALYAKRRNA
PGYAYSRDTFLQTELESSFLYEDTPDQAKATKDVKDDMERPNPMDRLVCGDVGFGKTEIA
IRAAFKAVSDNKQVAVLVPTTILAMQHFKTFSERMADFPVKIAYINRFRTAAQIKEILKG
VASGEINILIGTHRIVNKDIKFKDLGLLIIDEEQKFGVKTKDRLKELRVEVDVLTLTATP
IPRTLHFSLMGARDLSVIATPPPNRQPVTTEVHAFNETVIRDAISTEVRRGGQAFFVHNR
INDIESIGNMIMRLVPEARIGVAHGQMEGEKLERMMTRFIEGDYDVLISTNIIESGLDIP
NANTILINNAHYFGLSDLHQMRGRVGRSNRKAFCYLLTPPPSVLTADARKRLQTLEDFSD
LGEGFKIAMRDLDIRGAGNLLGAEQSGFVNDLGFEMYHKVLDEAVQELRENEFKDLFETK
PGELNLRLPDTVIETDLQVVIPERYVQNISERLALYTRLDSIENTTELEAFRQEILDRFG
PIPEEVINLIDMVNVRWKAERLYLEKLTLKNTILKGYFVSNGNDAFFTSDQFGKVIEYIK
RNPAKCSLKESKGRPIFTHSGIESVEQLNAVLAEMTS
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaccagccgaattagttggcctgtacgccaacgatagttttatacaaatcctgtcg
gagccgtttgggcgcaagcctaccggggatccgcagcggttgcaaattaaaggcttagcg
ggtagtctggatgcggtgtttgcgtcggctattgttaagtcggtcgggggcaatcacctg
ttcgtgatgaccgaccgcgatgaagcggcttacttcttcaacgacttgcagcacctgctc
gaacgcgaggtgttgctgttccccatgtcgtacaaaaagccgtatctgtacgaggaggtc
gagaacgccaacgtactgatgcgggcggaagtgcttaacaagctaaacccggccccgaaa
gatgggctgctgatggttacatatcccgaagccctatcggagaaggtaatcaacaaacgg
tcgttgcaggctaacacgctgaccatccgggtaggggagaagatcgatacgaacttcgtc
gccgatctgctgctgacctacgagttcgagaagacggatttcgtctatgaagcgggtcag
ttctcggtacgcgggggtattatcgacgttttttcgttcgccagcgaatacccgttccgt
atcgacttgtttggcgatgaggtggaaagcatccgcaaattcaacccggaaacgcagcta
tctaccgacccggttgacttcatcaacgttattccgaacatccagacaaagctgattgag
gaaacgcgggacccgtttttcagcttcctgcctgattcgaccacgatctgggcgaaggac
gttgagtttacgctggagatcattgagaaatgctacgaaaaggccgagcaaagcttcgag
acgattttggccagtagcggggggattcaggttatatccgaccccggcgatctgttcgaa
acccgacgcacgttcctgaatcaggtcaaggagtttcgcacggtcgagtttgggcggaaa
ttctacttcaaaaccgacacccggcagcagtatcaatcgaagccgcagccgtcgtttaac
aaggatttcaaacggctggtcgataccctgggtgacaatcaggcgaagggctacaccaac
gtcatcgcggccgagtcgttcaagcagctagacaggcttcgtagcattttcgaagaactc
gacccccacctgacgtttcagccgctcaacatcggtctgcgcgaggggtatatcgacgat
tcgctgaagattgtctgcttcactgaccatcagcttttcgaccggtactaccgattcaaa
gttcaggataagtttaccaagtcgaaagccctgacgttgcgggagcttaaaacgctgcaa
ccgggcgactacgtaacccacatcgatcacggcattggccggtttgcggggctggaaaag
gtcgacaacgcggggaatcagcaggaagcgattcggctaatttaccgcgacaacgacatt
ctgctggtcagcatccacagcctgcataagattgcgaagtacaccggccgggaggggagc
cccccgccgatgagtaagctgggttcgcaggaatgggaacagaagaaatcacgcattcgt
aagcaggtcaaagacattgcccgcgaactgattgccctctacgccaaacgccggaatgcg
ccaggctacgcctacagccgcgatacattcctgcaaaccgagcttgaatcgtcgttcctc
tacgaagacacacccgatcaggcgaaggccaccaaggacgttaaagacgacatggagcgg
ccaaaccccatggaccggctcgtgtgtggtgacgttggttttggcaagacagaaattgcg
atccgggccgcgttcaaagccgtcagcgacaacaagcaggtcgctgtgcttgtcccgacg
acgattctggcgatgcagcattttaagacgttctcggagcgcatggccgatttcccggtc
aaaatcgcgtacatcaaccgtttccgtacagccgcgcagatcaaagagattctgaaaggt
gtcgcatccggcgagattaatattctgattggtacgcaccggattgttaacaaagacatc
aaatttaaagacctcggcctgctgattatcgatgaggagcagaagttcggggtgaagacg
aaagaccggcttaaggaactgcgtgtcgaagtcgacgtgctgacgctgacggctacgccc
attccccggacgctacatttctcgctgatgggtgcccgcgacctgtcggttatcgctact
ccgccacccaaccggcaacccgtcacgacggaggttcatgcgtttaacgagactgtcatt
cgcgacgcgattagcacggaggttcgtcggggtggtcaggcattcttcgtgcataatcgg
atcaatgatattgagtcgattggtaatatgattatgcggctagtacctgaagcgcggatt
ggcgtggcccacgggcaaatggaaggggagaagctggaacggatgatgacccgttttatt
gaaggcgactacgacgtgctgatctcgacgaacatcatcgaatcaggactggatatcccg
aacgccaacacgattctgattaacaatgcgcactacttcggtctgtcggatttgcaccag
atgcggggtagggtgggacgatcgaaccggaaagcgttctgctacctgttgaccccccca
ccgtcggtactgacggccgacgcccgcaagcgcctgcaaacgctggaagacttttccgac
cttggcgaagggtttaaaattgccatgcgcgacctcgacatccggggggcgggtaacctg
ttgggggccgaacaaagcggattcgttaatgacctgggtttcgagatgtaccacaaagtg
ctcgacgaagccgtgcaggaactgcgcgaaaacgagttcaaagatctgttcgagacaaaa
cccggcgagttgaatctgcggctgcccgatacagttatcgaaaccgatttgcaggtcgtc
attcccgaacgctacgtacagaacatttcggagcgattggctctgtacacccgtctcgac
agcatcgaaaatacgaccgaactggaagcgttccggcaggaaattctggaccgtttcggc
ccaattccggaagaggtcattaacctgatcgacatggtaaacgtgcggtggaaagccgag
cgcttataccttgaaaaactgacgcttaagaatactattctgaaaggctacttcgtttct
aacgggaatgacgcgttcttcacgtccgaccagtttggcaaagtaattgagtacatcaag
cgaaatcccgcgaagtgctcattaaaagagtcgaaaggaaggccgatttttacgcattca
ggcattgagtcggtcgagcagttaaacgccgttctggccgaaatgacgagttaa
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