Spirosoma rhododendri: HH216_07560
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Entry
HH216_07560 CDS
T08048
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
srho
Spirosoma rhododendri
Pathway
srho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH216_07560 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srho03019
]
HH216_07560 (recQ)
03400 DNA repair and recombination proteins [BR:
srho03400
]
HH216_07560 (recQ)
Enzymes [BR:
srho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HH216_07560 (recQ)
Messenger RNA biogenesis [BR:
srho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HH216_07560 (recQ)
DNA repair and recombination proteins [BR:
srho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HH216_07560 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
DUF6806
Motif
Other DBs
NCBI-ProteinID:
QJD78297
UniProt:
A0A7L5DQH6
LinkDB
All DBs
Position
1835118..1837322
Genome browser
AA seq
734 aa
AA seq
DB search
MMQVDQTVHTTLRERLKEIFGYNQFRGDQEAIIHSILFGRNTFVIMPTGAGKSLCYQLPA
IVSEGTAVVISPLIALMKNQVDQLNAFGINAQFLNSTLSKTEMNRVKRDTLNGTLKLLYI
APESLTKEENLDFLKKANISFVAIDEAHCISEWGHDFRPEYRKIRGIVDNIGNLPVIALT
ATATPKVQQDIQKNLQMEDADLYKTSFNRKNLYYEIKPKVDAKKQLIKYVKQNKGKSGII
YCLSRKTVEEIAELLRVNDVKALPYHAGLDPQTRMHNQDAFLNEDVDVVCATIAFGMGID
KPDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCVMFYSYDDIQKLEKFNKDKSVTERD
NAKHLLGEMVSYANLGVCRRRQLLGYFGEYLEKDCGFCDNCTKPSPTFKVQSEVVLALQT
VLQTDQRFDVSHLSDVLTATSNQYVTSYEHNRLDVYGKGREYNETAEFWCSLIKQITIYG
YLEKDVDNYGILKLTQRGLNYIEDPYPLTLAKDHNYDQVATDDDDDKDTAPTSGGAAYDQ
ELLGLLKALRKKVAKEKNLPPYVIFQDPSMEEMATTYPTTREEMAQVNGVGLGKVQKFGK
PFIDLIAKYVADNDIETDKDVVIKSMVNKSKVKIYIIQQIDRKIDLDEIAESKALSMEDL
MEEIEHICYSGTRLNLDYYINQVMDEDRQDEIFEYFMSAETDNIAIAMTQFGGDDFTEQD
LRLMRIKFLSEVAN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaggttgatcagacagtccatacgactctcagggaacgcctaaaggaaattttt
ggctataatcagttccggggcgatcaggaagcgattattcatagtatcctgtttgggcgt
aatacattcgtaattatgccgaccggagctggcaaatcgctctgctatcaattgcctgcc
attgtcagtgagggcactgccgtggtgatttcgcccctcattgccctgatgaagaatcag
gtcgatcagctaaacgcattcggtatcaacgcgcagtttctaaattcgaccctctcgaaa
acggaaatgaaccgcgtcaaacgcgatacgctgaacggtacgctcaagctgttatacatc
gcgccggagtcgttgacgaaagaagaaaatttggactttttgaagaaagccaacatttcg
ttcgtcgctatcgatgaagcacactgtatttcggagtgggggcacgacttccgcccggag
taccgcaaaattcggggtatcgtcgacaatatcggcaacctccccgttatcgccctgacg
gcaaccgccacgccgaaggtgcagcaggacattcagaagaacctccagatggaggatgca
gacctctacaaaacgtcattcaatcgaaagaatctttactacgaaatcaagccgaaggtt
gacgccaagaagcaactcattaaatacgttaagcagaacaaaggcaagtcgggcattatc
tattgcctgagccgtaagacggttgaggagattgcggaactgctgcgtgtcaacgacgta
aaagcgttgccttaccatgctggtctggatccccaaaccagaatgcataatcaggatgcg
tttttgaacgaagacgtcgacgtagtctgtgcaacaatcgccttcggaatgggtatcgac
aaacccgacgtgcgtttcgtaattcactacgacgctcccaaatcactcgaagggtactac
caggaaacgggccgcgccggtcgcgacgggctggaaggtaactgcgtcatgttctacagc
tatgatgatattcagaagctggagaaattcaataaagacaagtcggtaaccgagcgcgat
aacgccaaacacctgctgggcgaaatggtgtcgtacgctaatctgggcgtttgtcgtcgt
cggcagctgctgggttatttcggtgagtatcttgaaaaagactgcggtttttgcgacaac
tgtaccaagccgtcgcccacctttaaagtgcagagtgaggttgtgctggcgctgcaaacc
gtactgcaaaccgatcagcgtttcgacgtttctcacctgagtgatgtgctgacggcgacg
tcgaatcagtacgtaacgagttacgaacacaaccggctcgacgtgtatggtaaaggccgg
gaatacaacgaaacggccgagttctggtgctcgctgatcaagcagattaccatttacggc
tacctcgaaaaagacgtcgataactacggcattctgaagctgacgcagcggggtcttaac
tatatcgaagatccgtatccgctgacgctggcaaaagaccacaattacgatcaggtagcc
accgacgacgatgacgataaggacactgcgccgacgtcgggtggagcggcatacgatcag
gagttgctggggctgctgaaagcactgcgcaagaaagtcgcgaaggaaaaaaatctgccc
ccctacgtaatcttccaggatccgtcgatggaagaaatggccacgacctaccccaccacg
cgggaggaaatggcgcaggtcaacggggttggcctgggtaaggtgcagaaatttggcaag
ccgtttatcgatctgattgccaaatacgtggccgacaacgacatagagacagacaaggat
gttgtcatcaagtcgatggtcaacaagtcgaaggtcaaaatttacatcattcagcagatt
gaccgaaaaattgaccttgatgagattgccgagtcgaaggcgctttcaatggaagatctg
atggaggaaatcgagcacatctgctactctggtacgcggctgaacctcgattactacatc
aatcaggtaatggacgaagatcggcaggacgagatctttgaatactttatgagcgccgaa
acggataacatcgcaatcgcgatgacgcagtttgggggtgatgattttaccgagcaggac
ctgcgattgatgcgcatcaaattcctgtcggaagtagctaactaa
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