Spirosoma rhododendri: HH216_10005
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Entry
HH216_10005 CDS
T08048
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
srho
Spirosoma rhododendri
Brite
KEGG Orthology (KO) [BR:
srho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srho03019
]
HH216_10005
03009 Ribosome biogenesis [BR:
srho03009
]
HH216_10005
Messenger RNA biogenesis [BR:
srho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HH216_10005
Ribosome biogenesis [BR:
srho03009
]
Prokaryotic type
rRNA processing factors
HH216_10005
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
ATG17_like
Baculo_LEF-11
DnaJ_CXXCXGXG
DUF7351
Motif
Other DBs
NCBI-ProteinID:
QJD78725
UniProt:
A0A7L5DKW7
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Position
complement(2377872..2379380)
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AA seq
502 aa
AA seq
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MQNKRLLEYHEEELDSSFTVGDLYLGTVKKLSSGLNAAFVDVGHEKDGFLHYQDLGPNIN
SLNKFVKDVIAKRVTTGRLDTVTLEPAIDKIGKIDKVLTKNSPILVQVVKEPISTKGPRL
SCDISIAGRYIVLVPFADGVNLSKKITDRAERSRLQKLMLSLKPPHFGIIVRTVAQDKDV
DELDRDLQNSLAKWDSAVKSLSEARPRDRVLGEMNRASSILRDMLNESFESITVDTRESF
DEIRQYIHTIAPDKERIVKLHNGKTKVFEALGLEKQLKSLFGRSVSLPGGGYLIIEHTEA
LHVIDVNSGNKSNSEEDQEATAISVNREAAKEIARQLRLRDMGGIIVVDFIDMKKPENKK
LLQDIMRDEMKPDRSKFTILPLTKFGLMQITRQRVRPEMNIVTREVCPTCGGSGTIQASV
LVTDVIESNLDYILTKQNETGISIAMHPFLYAYYTKGFYSKQMQWYMKYKTWIKLIKDSS
LGIVNFKFFNKAGEVIETGSGS
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaacaagagactgctggagtatcacgaagaagagttagacagcagctttactgtc
ggcgacttgtatctgggaaccgtcaaaaaactttcatcgggcctcaacgcggcatttgtc
gacgtgggtcacgaaaaagacggctttctgcattatcaggacctgggtccgaacatcaac
tcgctcaacaaatttgtcaaagacgtaatagccaaacgcgtcaccacaggtcggctcgat
actgttaccctcgaaccggctatcgataaaatcgggaaaatcgataaggtactgaccaag
aatagcccgattctggtgcaggtggttaaagaacccatctcgaccaaaggtccacgccta
tcctgcgacatatccatcgccggccgctacatcgtgcttgtccccttcgctgatggggtc
aatctatccaaaaaaattaccgatcgtgctgagcgtagccgtctgcaaaagctgatgctc
tcgctcaagccaccgcattttggtatcatcgtacgcacggttgcccaagacaaagacgtc
gacgaactcgaccgcgacctgcaaaactcgctggcgaagtgggattcggccgtaaaaagc
ctgtcggaagcccgcccccgtgatcgtgtgctgggtgagatgaaccgagcctcgtcgatt
ctgcgtgacatgctcaacgaatcgtttgagagtatcacggtcgatacgcgggaatcgttc
gatgagattcggcagtacatccataccattgcccctgataaggagcgcatcgttaagcta
cacaacggcaaaacaaaagtcttcgaggcattgggtctggaaaaacagctgaagtcgctg
tttggccggtctgtaagcctgcccggtggtggctatctgattatcgagcatactgaggcc
ctgcacgttatcgacgttaacagcggcaacaagtcaaactcggaagaagatcaggaagcg
acagcgatcagcgtcaaccgggaagcagctaaggaaattgcccgtcagctgcgtctgcgc
gacatgggcggtatcatcgttgtggactttatcgacatgaagaagccggagaacaaaaag
ctcctgcaagatatcatgcgcgatgagatgaagcctgacaggtcgaaattcacgatcctg
ccgctgaccaagtttggtctaatgcagattacccggcagcgggttcggccggaaatgaat
atcgtcacgcgggaagtatgcccaacctgcgggggcagcggcacgattcaggccagtgta
ctggttactgacgtaattgaaagcaacctcgactacattctgactaagcagaacgaaacg
ggtatttctattgccatgcacccctttctgtacgcgtactacacgaaaggcttctattcg
aagcagatgcagtggtacatgaagtacaaaacgtggataaagcttattaaagacagttcg
ctgggcattgtcaacttcaaattcttcaacaaggccggcgaagtcattgaaacaggcagt
ggttcgtaa
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