Spirosoma rhododendri: HH216_10605
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Entry
HH216_10605 CDS
T08048
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
srho
Spirosoma rhododendri
Pathway
srho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH216_10605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srho03019
]
HH216_10605
03009 Ribosome biogenesis [BR:
srho03009
]
HH216_10605
Enzymes [BR:
srho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HH216_10605
Messenger RNA biogenesis [BR:
srho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HH216_10605
Ribosome biogenesis [BR:
srho03009
]
Prokaryotic type
rRNA helicases
HH216_10605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
Cas3-like_C_2
AAA_19
UBA
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
QJD78827
UniProt:
A0A7L5DS97
LinkDB
All DBs
Position
complement(2530729..2532780)
Genome browser
AA seq
683 aa
AA seq
DB search
MNTNTTNADEQNEVLPSDQSVAETTNTAADDNETPVANTEVEQIVSDVIVAEPAAETPAK
SISEQLVANPNQILFSDLAISPELLQAVTDMGFVSPSPIQAEAIPPILAGRDVIGQAQTG
TGKTAAFGIPALELIDVQNRAVQTLILCPTRELALQVAEEIKKLSKHKRGVRVEAIYGGD
SIERQIRSLKSGVHIVIGTPGRVMDHMERNTLKLDQVRMMVLDEADEMLDMGFREDIENI
LEEMPEERQTILFSATMSKPIMQITQKFQNDPVLVKVVKKELTNTNIEQVYFEVKPKAKV
EVMCRLIDMYDLKLMLVFCNTKRKVDEIVEDLQIRGYQAEGLHGDLRQAQRNNVMSKFRA
GTTSVLVATDVAARGIDVDDVDAVINFDIPLDEEYYVHRIGRTGRAGKSGRAFSLVGRDE
KYRFREIQSYTKVRVEKGVIPSFEDIVGVRKARFIEQVQQTITESKDLNLYDDMLNQLHH
AGFSTEQIVAALVKRSMGLEKNEFADQNLGLEDDRRREGRGNDRYADRNDRGNSRFGDRN
DRGNSRFGDRNDRGNSRFDDRRGGPRGDRPAYGDRNDRGGRSEGGDGARRPYFDRDDQRQ
PRERDANMTRLMVSIGRRDYVRPGDIVGAIAGEANISGSSIGSIDIFDKHTYVDVPKDVA
NRVVDAMEGNTIKGRRVNIEIAR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccaacacaacaaatgccgacgagcagaacgaggttctgccgtcagaccaatcg
gtagctgaaactaccaacaccgcagccgacgacaacgaaacgccggtcgccaacactgaa
gttgagcaaatcgtcagcgacgttatcgttgccgaacctgcagccgaaacaccggccaaa
tcgatcagcgaacaactggttgccaaccccaatcaaattttattctccgatctggcgatt
tcgcccgagctgctgcaggccgttacagacatgggcttcgttagcccgtcgcccattcag
gccgaagcgatcccgcccattctggctggccgcgacgtgatcggacaggcgcagacgggt
acgggtaaaaccgcagccttcggtattcctgcccttgaactgatcgacgtgcagaaccgg
gccgtacagaccctgattctatgcccaacccgcgaactggcgttgcaggtagccgaagag
atcaaaaaactctcgaagcacaagcggggtgtccgggtcgaagccatctacggtggcgat
tcgattgagcggcagattcgctcgctgaagagcggggttcatatagtgatcggtacaccc
ggccgcgttatggaccatatggagcgcaatacgctcaagctggatcaggtcagaatgatg
gtgcttgatgaagccgatgagatgcttgatatgggcttccgcgaagacatcgagaacatt
ctggaagagatgcccgaagagcggcagacgattctattctcggctacgatgtcgaagccg
atcatgcagatcacccagaaattccagaacgatccagtactggtgaaggtggtcaagaaa
gagctgacaaacaccaacatcgagcaggtttatttcgaggtgaagccgaaggcgaaagtc
gaggtgatgtgccgcctgatcgatatgtacgacctgaaactgatgctggtgttctgtaac
accaagcggaaagtcgacgagatcgtggaagacctgcaaatccggggctatcaggccgaa
gggctgcacggcgacctgcggcaggcgcagcggaacaacgtgatgagcaagttccgcgcc
ggtacgacgagcgtactggttgctacggacgtagctgcccgtggtatcgacgtggacgac
gtagacgcggttatcaacttcgacattccgctcgacgaagaatattacgtacaccgtatc
ggccggacgggccgcgcgggtaagtcgggccgggcgttctcgctggttggccgcgacgag
aaataccgcttccgcgaaattcagtcgtacaccaaagtacgggttgaaaaaggcgtaatt
ccttcgttcgaagatatcgtgggtgtgcgcaaggcccgcttcatcgagcaggtacagcag
accatcacggaaagcaaagacctgaatctgtatgacgacatgctcaaccaactgcaccac
gccggtttctcgaccgagcagatcgtggccgcgctggtgaaacgtagcatgggtctggag
aaaaacgaattcgccgatcagaacctgggccttgaagacgatcgccgtcgggaaggtcgg
ggcaacgaccgctatgcggatcgcaatgatcggggcaactcgcgctttggcgaccgtaac
gatcggggcaactcgcgtttcggcgaccgcaacgatcggggcaactcgcgcttcgacgac
cggcgcggtggaccacgtggtgaccggcctgcttacggcgatcgtaacgaccggggtggc
cgcagcgaaggtggcgatggcgcacgtcgtccgtacttcgaccgcgacgatcagcgtcag
ccgcgtgagcgcgatgccaacatgacccgcctgatggtaagcatcggtcgtcgggattac
gtacggccgggcgacatcgtaggtgccattgccggagaagccaacatctcgggtagcagc
atcggcagcattgatatcttcgacaaacacacgtacgtcgacgtaccgaaagacgtagcc
aaccgcgttgttgatgcgatggaaggcaacacgatcaaaggtcgccgggtaaacatcgaa
attgctcgataa
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