Spirosoma rhododendri: HH216_21180
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Entry
HH216_21180 CDS
T08048
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
srho
Spirosoma rhododendri
Pathway
srho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HH216_21180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srho03019
]
HH216_21180
Enzymes [BR:
srho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HH216_21180
Messenger RNA biogenesis [BR:
srho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HH216_21180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
UvrD-helicase
Utp25_C
ERCC3_RAD25_C
AAA_22
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QJD80648
UniProt:
A0A7L5DVL9
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Position
5091633..5093204
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AA seq
523 aa
AA seq
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MQFTDLELIDPILAALTEEGYSSPTPIQQQAIPLLLNRRDLLGCAQTGTGKTAAFAIPIL
QLLTADKAKQANAPRRIKTLVLTPTRELAIQIDESFAAYGRHLNMKHTVIFGGVSQHSQV
NTIRSGIDILVATPGRLLDLMNQGIINLRDVQYFVLDEADRMLDMGFIHDVKRVIAKLPE
RRQSLFFSATMPPDVAKLADTILNNPAKVEVTPVSSTADTIQQAMYFVSKDDKRKLLTHI
LEDSRIKSVLVFARTKHGADRVAKDLVKAGIQAEAIHGNKSQNARQRALTNFKSRETRVL
VATDIAARGIDVDELSHVINYELPNIPETYVHRIGRTGRAGHDGIALSFCDEEETEYLRD
IHKLIGKKVPVIEEHPYVLNIDASTVTPKAPQQQRGQGRGQRPQQQRSGNGNRPSGQQSR
SNEQRSDAPSGQRSQSNSRPSSGQGRSGQGGPAGGRSESGRDNRNGQSNDRRDSRNSNSQ
PQSNSRRDGHPNQSGRPNRDGDEKPSRGTGNSRYLDFSNDKNY
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttactgatttagaactgattgaccctattctggcggctttgaccgaagaaggg
tactcatcacccacacccattcagcagcaggcaattcccctgttgctcaaccgccgggac
ctgctcggctgcgcccagaccggcaccggtaaaacagccgcttttgccattcccattctg
caactgctcaccgccgacaaggcaaagcaggcaaacgcgccccggcgaatcaaaacgctg
gtgctgaccccaacgcgcgaactggctattcagatcgacgagagttttgctgcctacggc
cgtcacctgaacatgaagcacaccgttatcttcggtggcgtttcgcaacacagccaggtc
aacaccatccggtcgggtatcgatattctggtggcaacaccgggtcgtctgctcgacctg
atgaaccagggcattatcaacctgcgcgacgttcaatacttcgtgttggacgaggccgac
cgcatgctcgacatgggctttatccacgatgtaaagcgggtaattgccaagttgccggag
cgtcggcagtcgctgtttttctcggcaacgatgccgcccgatgtggcgaaactggccgat
acgattctgaacaatccggcgaaggttgaagtaacccccgtttcgtcgaccgccgacacg
attcagcaggccatgtatttcgtcagcaaagacgacaagcggaaactgctgacacatatt
ctggaagatagccgcatcaaatcggtgctggtatttgcccggacgaaacacggtgcagac
cgggttgccaaagatctggtaaaggctggtattcaggccgaagccattcacggcaacaag
tcgcagaacgcccggcaacgcgccctgaccaatttcaaaagccgcgaaacccgggtgctg
gttgcgaccgacattgcagcccgtggtatcgacgtcgatgaactgtcgcacgtgattaac
tacgagttgccgaacatccccgaaacttacgttcaccgcatcgggcggacgggccgggcg
gggcatgacggtattgcgctgtcgttctgcgatgaggaagaaaccgagtacctgcgcgac
attcacaagctgattggcaagaaggtgcccgtcatcgaagaacacccgtacgtgctcaac
atcgatgcatcgacggtaacgccgaaagctccgcaacagcagcgtgggcagggtcgtggt
caacggccacagcaacaacgcagcggcaatggcaaccgtccatcggggcagcaaagccgg
agcaacgagcagcggtcagacgccccatcgggtcagcggtctcaatcgaacagccgcccc
tcgtctggtcagggtcgctctgggcagggcggtcctgccgggggccggtcagaatcaggg
cgggacaaccgcaatggtcaatcaaacgaccggcgcgacagccgcaacagtaacagtcag
ccacaaagcaacagtcgacgcgatggacacccgaatcagtcgggacggccaaaccgcgac
ggcgatgaaaagccgagccggggtacgggcaacagtcgatacctcgatttcagcaacgat
aagaactattga
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