Spirosoma rhododendri: HH216_24255
Help
Entry
HH216_24255 CDS
T08048
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
srho
Spirosoma rhododendri
Brite
KEGG Orthology (KO) [BR:
srho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srho03032
]
HH216_24255
03400 DNA repair and recombination proteins [BR:
srho03400
]
HH216_24255
Enzymes [BR:
srho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HH216_24255
DNA replication proteins [BR:
srho03032
]
Prokaryotic type
DNA Topoisomerases
HH216_24255
DNA repair and recombination proteins [BR:
srho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HH216_24255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QJD81187
UniProt:
A0A7L5DYW9
LinkDB
All DBs
Position
5756859..5757956
Genome browser
AA seq
365 aa
AA seq
DB search
MNTAQLMHDPAQAARAAKLQYVSDTIPGISRKKAGDHFTYTNAKGEVIKDDDTLSRIRSM
ALPPAWERVWISPKPNSHLQATGIDTKNRKQYRYHAAWNAIRSETKFFRMTAFGEALPKL
RTRLARDLKQRELTRDKVVAIALSVMEQTLIRVGNAAYEKEYGSYGLTTLKDRHVKADGS
EVQFSFKGKKGIYHDITLHDPKLSKLVKACRDIPGKELFQYFDEEGNRHPIDSGMVNEYL
QETMGDEFSAKDFRTWAGTVNALRLLVELEPCDSEKELKKNVNTILDEVSHTLGNTRTVC
RKHYVHPQILEAYECRDLNPYIKNKGRFRQTSPNGLDGVEKLLLKFLSDQVKHTVKKAAK
TTATA
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgaacacggctcaactcatgcacgacccggcacaggcagccagggcggcaaaactccag
tacgtcagcgacaccattcccggtatcagccgaaaaaaggcgggtgaccactttacgtat
accaacgcgaagggcgaagtcatcaaagacgacgatacgttgagccgtattcgcagcatg
gcgctgccgcccgcctgggagcgggtctggatcagtccaaaaccgaacagtcatttgcag
gctacgggtatcgacacgaaaaaccggaagcagtaccgataccatgccgcctggaacgcc
attcgcagcgaaaccaagtttttccgcatgacagccttcggtgaagcgttgcccaaactc
cgcacacggctggcaagggacctgaaacagcgcgagttgacccgcgataaagtcgttgcc
attgcgctcagcgtgatggagcaaaccctgattcgggtgggaaacgcggcttacgaaaag
gagtacgggtcgtatggcctgacaacgctgaaagaccggcacgtgaaagccgacggcagc
gaggttcagtttagctttaagggcaaaaaaggcatctaccacgacatcacgctgcacgac
cccaaactgtcgaaactggtgaaagcctgccgcgacattcccggcaaggagctgttccag
tatttcgatgaggaagggaaccgccacccaatcgactccggcatggtcaacgagtatttg
caggaaacgatgggcgacgagttttcggcgaaggacttccgcacctgggccggtacggtc
aacgcgctgcggctgctggtcgagctggaaccctgcgacagcgagaaggaattaaagaag
aacgtcaatacgattctcgacgaggtatcgcacacgctggggaatacacgtacggtttgc
cgtaagcattacgtgcacccgcagattctggaagcgtacgaatgccgcgatctgaatccg
tacatcaaaaacaaaggccgtttccggcagacgagtccgaacgggctggacggggtcgaa
aaactgctgctgaagttcctgagcgatcaggtgaagcataccgtaaagaaagcggcaaag
accacggctaccgcctga
DBGET
integrated database retrieval system
