Shewanella rhizosphaerae: K0I63_02330
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Entry
K0I63_02330 CDS
T09262
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
srhs
Shewanella rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
srhs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srhs03021
]
K0I63_02330 (rapA)
Transcription machinery [BR:
srhs03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
K0I63_02330 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
AAA_34
FtsX_ECD
Motif
Other DBs
NCBI-ProteinID:
QYK13376
LinkDB
All DBs
Position
complement(500896..503802)
Genome browser
AA seq
968 aa
AA seq
DB search
MPFSLGQRWISDTESELGLGTVIGLEGRMVTLMFPATDENRMFARDDAPLTRVIYNPGDI
IESHEGWSLKVSEIEEKNQLVIYHGIHTETGEEVSLRETLLNHNIRFNKPQDRLFAGQID
RLDRFGVRYQSQLLRHKLATSDLLGLQGPRVGLIPHQQWIAHEVGQRFAPRVLLADEVGL
GKTIEAGLIIHQQLLTGRAERILIIVPDTLRHQWLVEMLRRFNLRFSVFDEDRCVEAYAD
HDNPFYTEQLVICSLELLRKKKRLDQALDADWDLMVVDEAHHLEWTEEEPSRAYRVVEAL
SEVVPGVLLLTATPDQLGHQSHFARLRLLDPDRFYDYQAFLKEEESYKEVASAADALASG
KRLPDEAVASLTELLNEKDITPALRLIEDESVDNEQRDQARSELLQELLDRHGTGRVLYR
NSRASVKGFPTRIFNAHPQTMPAQYETAARVSDMMGGQTDLTAKVKQALSPEKLYQAFES
DSASWWKFDPRVDWLIDFLKNHRSKKVLIIASQAETALSLEEALRTREGIQATVFHEGMS
IIERDKAGAYFAQESGGAQALICSEIGSEGRNFQFASHLVLFDLPLNPDLLEQRIGRLDR
IGQANDVEIHLPYLANTAQENLMNWYHKGLNAFEQTCPTGHILFNEFSEELLTQLVYRDE
DKFTQLLNHTQSRYKALKKAMEQGRDKLLEINSHGGDKAQKLVESLAARDQDTQLIGSVI
RLWDIIGVEQEDSGENAIVLHPSEHMMFPTYPGLPEDGITVTFDREMALSRDDIALITQE
HPLVQTGLDLITSSETGTTSVAVLKNKALPAGTIFLELIYMADASAPRSSQLYRYMPPTP
VRVLLDKNGNNLSQNVSYESFDKQLSAVNRHIASKLVNASQTLLHPLFAKGEEFAQAAMK
QLTEEASNKMTQQLTAELERLEALKAVNPNIRDEELEHLRNQMVELGNYLDACQLQLDAV
RLVLVSHA
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgcccttttccttaggtcaacgttggattagtgataccgaatcggaactcggtttaggt
actgtcattggactcgaaggccgtatggtcaccctgatgttccccgccactgacgaaaac
cgcatgtttgcccgcgacgatgccccgctaacccgagtgatctataaccccggcgatatc
attgagagtcacgaaggatggagtctcaaggtcagcgaaatcgaagagaagaaccagctg
gtgatctaccacggtatccacaccgagaccggcgaagaggtcagcctcagagagacgctg
cttaaccacaatattcgtttcaacaagccccaagacaggctatttgccggccagatcgat
cgtctggacagatttggcgtgcgctatcagagccagctgctgcgtcataagctggccacc
tcagatctgctgggcctacagggtccccgcgtcggcctgatcccccatcagcagtggatc
gcccatgaagtgggccagcgtttcgcaccgcgcgttctgttagcggacgaggtgggccta
ggtaagaccatagaagccggcctgatcatacaccagcagctgctgaccggccgcgccgag
cgtatcctgatcatagtgccagataccctacgtcatcagtggttggtggagatgctgcgc
cgcttcaacctgcgcttctcggtgttcgacgaagacagatgcgtcgaggcctatgccgat
cacgacaaccccttctacacagagcagctggtgatctgctcactcgagctgctacgtaag
aagaagcgcctggaccaggcgctggatgccgactgggatctcatggtggtcgacgaagcc
caccacttggagtggacagaagaggaaccgagccgcgcctaccgcgtggtcgaggccctg
agtgaagtggtgcccggcgtactgctactgaccgccaccccggatcagctgggccaccag
agccacttcgctcgtctgcgcctgctggatccagaccgcttctacgactatcaggccttc
ctcaaagaggaggagagctataaagaggtggccagcgccgccgatgccctggccagcggt
aagcgtcttcccgacgaggccgttgccagcctgaccgagctgcttaacgagaaagatatc
accccggcgctgcgtctgattgaagatgagagcgtcgataacgaacaacgcgaccaggcc
cgcagcgagctgctgcaggaactgttagacagacacggcaccggccgcgtgctctatcgc
aacagccgcgcctcggtgaagggcttcccgacccgtatcttcaacgcccacccacagacc
atgccggctcagtatgagactgccgccagggtgtctgacatgatgggtggccagacagat
ctgaccgccaaggtgaaacaggccctgagcccagagaagctgtatcaggccttcgagagc
gatagcgccagttggtggaagttcgatcctagggtcgactggttgatcgatttcctcaag
aaccatcgcagcaagaaggtgctgatcatcgccagccaggcggagaccgccctgagcctg
gaagaagccctgcgcacccgtgagggcattcaggccaccgtcttccacgaaggcatgtct
atcatagagcgcgacaaggccggcgcctacttcgcccaggaaagcggcggcgcccaggca
ctgatctgtagcgagatcggatcggaaggtcgtaacttccagtttgccagccacctggtg
ctattcgacctgccgctgaatccggatctgctggagcagcgcatcggccgtctggaccgt
atcggtcaggccaacgatgtcgagatccatctgccttacctggccaatacggcccaggaa
aacctgatgaactggtaccacaagggactgaacgccttcgagcagacctgccctaccggc
catattctgtttaacgagttttccgaagagctgctgacccagctggtctaccgcgacgaa
gacaagttcacccagctgctcaaccacacccagagccgctacaaggcgctgaagaaggcg
atggaacagggccgcgacaagctgctggagatcaactcccatggcggcgacaaggcgcag
aagttggtggagagtctggcggcccgcgatcaggacacccagctgatcggctctgtgatc
cgcctgtgggatatcataggcgtcgagcaggaagacagcggcgagaatgccatagtgttg
cacccgagcgagcacatgatgttcccgacctacccgggtctgccggaagatggcattacc
gtcaccttcgaccgcgagatggcgctgtcacgcgacgatatcgccctgatcacccaggag
cacccgctggtgcagacggggctggatctgatcacctcttctgagacaggcaccaccagc
gtcgccgtgctcaaaaacaaggcactacctgcgggcaccatcttcttggagctaatctat
atggccgatgcctcggcgccgcgctcgagccagctctaccgctacatgccaccgacgcca
gtacgtgtgttgctggacaaaaatggtaacaacctgtcgcagaacgtcagctacgagagc
ttcgacaagcagctgagcgcggtcaaccgccatattgccagcaagctggtgaacgcctcg
caaaccctgctgcatccactgtttgccaagggggaagagtttgcccaggcggcgatgaaa
cagctgaccgaagaggccagcaacaagatgacccagcagctcaccgcagagctggaacgt
ctggaggccctcaaggcggtcaatcccaacattcgtgacgaggagctggaacacctgaga
aatcagatggtcgaactgggcaactacttagatgcctgtcagctgcagctagacgccgtg
cgtctggtgctagtcagccacgcctaa
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