Shewanella rhizosphaerae: K0I63_02690
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Entry
K0I63_02690 CDS
T09262
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
srhs
Shewanella rhizosphaerae
Pathway
srhs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srhs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I63_02690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srhs03019
]
K0I63_02690
03009 Ribosome biogenesis [BR:
srhs03009
]
K0I63_02690
Enzymes [BR:
srhs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0I63_02690
Messenger RNA biogenesis [BR:
srhs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0I63_02690
Ribosome biogenesis [BR:
srhs03009
]
Prokaryotic type
rRNA helicases
K0I63_02690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_30
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QYK13446
LinkDB
All DBs
Position
complement(595005..596804)
Genome browser
AA seq
599 aa
AA seq
DB search
MSSSEKTFRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAF
ALPLLNAIDPNRNVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLN
ALRRGPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQE
RQLALFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILI
ATDVAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATKSRISPMNVPSPETVAERRLSRLGEQVSNTIDNESLDFMHGAVAQLCQQLEVDTEV
LAAALLNMVQQERPLQLPPIQERQRDSRDERNSRDRGDRSDRAPRGRRESRPTPANLGQA
DTLKDHPDVKMCRYVLDVGRDHGVGVGNIVGAVANEANIDSRYIGQIQLFDQITSIDLPE
GMPKDVLQHLKKVRVCGKPLNIREAGSEIVNASDDNRAPRRRKPVGERKSHRKGNRDNG
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagtgaaaaaactttccgcgaactcggcctgtccgagcctttgttgcgtgct
ctcgacgagctaggttatgaaaaacctacgccgatccaggccgccagtatcgaccccctc
atggcgggtaaagatattctaggccaggcgcaaaccggtacgggtaaaaccggtgccttt
gccctgcccctgctcaacgctatcgatcctaaccgcaacgtgccacaaattctggtactg
gcgccgacccgcgaactggcggtacaggttgccgaagccttcggtagctactccaaattc
atgaaaggcctgcacgtactgccaatctacggcggtcagagcatgcatcaacagcttaac
gccctgcgtcgtggccctcagatcgtcgtgggtacaccgggtcgtgtcatggaccacatg
cgtcgtggcaccctgaagctagagacactcaacgccttggtactcgatgaggccgatgaa
atgctcaagatgggctttatcgacgacatcgagtggatcctggagcacacgccgcaggag
cgccaactggcgctgttctcggccaccatgccagagcagatcaagcgcgtcgccaacaag
tacctgcaaacgccggtacacatcagcatcgccgccagccacaccacggttgagtctatc
gagcagcgcttcgtgcaggtgtctcagcacaacaaactcgaggccctggttcgcgtactg
gaagtagaaaacaccgaaggtatcatcatcttcgtacgtacccgtaactcttgtgtcgag
ctggccgagaagctggaagcccgcggttatgcctcatcgccactgcatggtgacatgaac
caacaggctcgtgagcgcgccgtcgatcagcttaagcgtggcaaactggatatcctgatc
gccaccgacgtggccgcccgtggtctggacgttgagcgtataggtcacgtgatcaactat
gatatcccctacgacaccgaagcctacgtacaccgtatcggtcgtaccggccgcgccggt
cgtaccggtatggcgattctgttcgtcacccacagagagatgcgcatgctgcgcaccatc
gagcgtgcgaccaagagccgtatctcgccgatgaacgtaccaagccctgaaacagtggcc
gagcgtcgtctgtcgcgtctgggtgagcaggtttcgaacaccatagacaacgaatccctg
gactttatgcatggcgccgttgcccagctgtgccagcaactggaagtggacaccgaagta
cttgccgccgcactgctcaacatggtgcagcaggagcgtcctctgcagctgcctcctatt
caggaacgtcagcgcgatagccgtgacgagcgcaactcgcgcgaccgtggcgaccgctca
gatcgtgctcctcgtggccgccgcgaatcgcgtccgaccccggcaaacctgggccaggca
gataccctgaaagatcatccagacgtcaagatgtgccgttacgtgctagacgtgggtcgt
gaccatggcgtgggtgtaggcaacatcgtcggcgccgttgccaacgaagccaacatcgac
agccgttacataggtcagatccaactgttcgatcagatcacctcgatcgacctgccagaa
ggcatgccaaaggatgtcctgcaacacctgaagaaggtacgcgtatgtggcaagccgcta
aacatccgcgaagcgggcagcgaaatcgtcaacgccagcgatgacaaccgtgcaccgcgt
cgtcgcaagcctgtgggtgagcgcaagtcacaccgcaagggcaacagagacaacggctaa
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