Shewanella rhizosphaerae: K0I63_03105
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Entry
K0I63_03105 CDS
T09262
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
srhs
Shewanella rhizosphaerae
Pathway
srhs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srhs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I63_03105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srhs03019
]
K0I63_03105
Enzymes [BR:
srhs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K0I63_03105
Messenger RNA biogenesis [BR:
srhs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K0I63_03105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
AAA_22
P-loop_SecA
HEM4
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QYK13521
LinkDB
All DBs
Position
complement(678318..679787)
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AA seq
489 aa
AA seq
DB search
MSFTTLGLSAPILKAIADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL
ELLSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQL
KRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQ
NLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLIQQ
GDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLVAT
DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLADIER
LIGKLLPRAEVEGFEPTHTLPETNLTPKRHGQHKGPRNPKPKSNSQRSSNRSSNGQGSNK
AGQPSRGNQAQGNKEGQGRRRTGASTGTSKPASEGQQAQNQGKSEHRDGNAPARRRRRRR
PSQSAPANH
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgagttttaccaccctggggctatccgctcccatactcaaagccatagccgacaaaggt
tatcaaaccccctcgcctattcaggcccaggctatcccagcagtattgtcgggtaaagat
gtgatggcggcggcgcagacagggacgggcaagacagccggctttactctgccactactg
gaactactcagtcagggccctcgcgcccgcagcaaacaggtgcgcgccctggtcttgacg
ccaacccgcgaactggcggcccagatcgccgaaagcgtcaccacctatggtcagcatctg
ccgcttcgcagcgcagtggtgttcggcggtgtcggcatcagcccacagatcagtcaactt
aagcgcggcgtcgatatcctggtggccacaccgggccgcctgttggatctctatcagcaa
gatgccgtgagcttctctcagctggagacactggtgctggatgaggccgaccgcatgctg
gacatgggctttattcacgacatcaagaagatcctcgccatcttaccgcccaagcggcag
aacctgatgttttccgccaccttctccgatgagatccgcaccctggccaaggggctggtg
aacaatccggtggagatctcggtcaccccgcgcaacagcacagccaacacggtacagcag
ctgatctgcccggtagacaaaaacaagaaatccgcagccttggtcaagcttatccagcaa
ggtgactggcaacaggtgctggtatttagccgtaccaagcatggcgccaaccgtctggct
aagcatctcgaggccaaggggatcaccgccgcggccatccacggtaacaagagccagggt
gcccgcaccaaggcgctggctaacttcaagtcgggcgacgtgcgcgtgctcgtagccaca
gatatcgccgcccgtggtctggatatcgaccagctgcctcaagtggtcaacttcgacctg
cctaacgtgcccgaagactatgtgcaccgcatcggtcgtaccggccgcgccggcgccgat
ggcaaagcggtctccctggtgagcgacgaagaggccaagctgctggcggatatcgagcgc
ctgatcggcaagctactgccgcgtgctgaagtagagggcttcgagccgacccacaccctg
cccgagaccaacctgacgccaaagcgccacggccagcacaagggaccgcgtaatcctaag
cctaaaagcaacagccaacgcagcagcaatcgctcaagcaacggccagggctcaaacaag
gctggacagcctagccgcggcaatcaagctcagggcaacaaagagggtcagggccgtcgc
cgaacaggcgcaagtactggtaccagcaagcctgcgagcgaaggtcaacaagcgcaaaac
caaggcaagtcggagcacagggacggtaacgccccagcacgccgtcgcagacgtcgtcgt
ccgagccagagcgcacctgcaaatcactag
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