Shewanella rhizosphaerae: K0I63_04190
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Entry
K0I63_04190 CDS
T09262
Symbol
fdhF
Name
(GenBank) formate dehydrogenase subunit alpha
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
srhs
Shewanella rhizosphaerae
Pathway
srhs00630
Glyoxylate and dicarboxylate metabolism
srhs00680
Methane metabolism
srhs01100
Metabolic pathways
srhs01120
Microbial metabolism in diverse environments
srhs01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
srhs00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
K0I63_04190 (fdhF)
09102 Energy metabolism
00680 Methane metabolism
K0I63_04190 (fdhF)
Enzymes [BR:
srhs01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
K0I63_04190 (fdhF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Pyr_redox_2
Molydop_binding
Fer4_20
Molybdop_Fe4S4
Pyr_redox
Fer2_4
Pyr_redox_3
Fer4_7
NAD_binding_8
Fer4
DAO
FAD_oxidored
Fer4_8
Fer4_9
HI0933_like
Fer4_21
Fer4_18
Fer4_6
NAD_binding_7
Fer4_17
Fer4_Nqo3
Fer4_10
Lys_Orn_oxgnase
GIDA
FAD_binding_2
Amino_oxidase
Thi4
FAD_binding_3
AlaDh_PNT_C
Fer4_15
Fer4_13
Fer4_2
Fer4_16
2-Hacid_dh_C
Emfourin
CxC7
Fer4_22
Motif
Other DBs
NCBI-ProteinID:
QYK13725
LinkDB
All DBs
Position
complement(932011..936243)
Genome browser
AA seq
1410 aa
AA seq
DB search
MIELTFDGQVVKANRGEDLLTCAKAAGIAIPNLCHLGKQLDDKLAGKQDCNLCYVEVRDE
KGDFHTVKACKTQVEAPLVVITHSAALSKRRQAALKHLLSDHFADCEAPCQQACPAGVDV
QSYLLHIAQGNHREAVKVIKQTLPLPLSIGRVCPAFCESACRRGELDEPLAIRQLKRHAA
DLDLDSEDTYVPPKAPATGKRVAIIGSGPAGISAGYYLSNSGHEVTIFESMPKAGGWLRY
GIPEYRLPKQILDREIDLLCQNGLVIQTDTRLGRDIHLKELVNQFDAVCLAIGAQKAVPM
NYPGVDLEGCYLGVDYLKDHSTDNNYHTGQKVAVIGGGNTAIDCARTALRKGAEVTLIYR
RTRDEMPAEVYEIEEAEHEGVRFYFLTNPIENHGDANGRINAVTFEKMRLGEPDASGRRS
PQATGETFTEAFDTVIPAVSQTPDMTFLEHPESQLSTGEVALTRWNTFSGCEHTMSSGVE
KLFVLGDSRTGPATAVAAVADGRKAANAIEKLLSGELSCELTPAPFNSQKQDEQKPDSRH
FPARQLQAKAKMPELAINKRLDNFDEIELGFNDEEAMLEAARCLECGCQANTECALRDYA
TEYRVDGAALDKQGHRAFTQDASTPFINFDPNRCISCGACVAMCRQQSGHQAISFEPDSY
LALPQEMAATYSRQAPRAGFNATMADSQCVQCGNCVQVCPTGALTDARDKRQGVKHELKQ
TSTVCTYCGVGCRVIIHSDPVTGELKRVSGDNRSQVNEGMLCVKGRFGFDFINSQQRLTQ
PLLRKDGELAPVSWNEAIDYIGTQLGRIKAEHGGDAIAGLASAKATNEDNYLFQKLFRSV
IGTNNIDHCARLCHASTVTALQESLGSGAMTNDIPSIKSSDLIFILGSDTEAAHPIIASK
IKQAVSQHGSRLVVADPKRVSIADSAELYLRHRPGSDVMLLNAIMQEIIKQGWHDSDYIS
RRVEGFDALRAEVMKDDYSLSNAAKITGVDAEEIAQLARLIGTAEKTAIYYAMGITQHTS
GHDNVTAIANLQLLCGNIGIEGAGINPLRGQSNVQGACDMGALPNYFTGYQKVTDPEVQA
AFRQAWQQEWLPDQIGLAATEMMHALAHGRLKALYVMGENPVLSDPDQAHVMQGLESAEL
LIVQDIFMTETAQLADVVLPAASFAEKPGHFTNTERRVQRLQAAIESPGLARRDWQIITD
IAKALGADWRYEDEASIWQELTRVTPQYRGIQWQDTDPSTPQGLLGKQWPCPEPGHEGTR
LMHKERFTRGLGKMTPVGYRLPAELPCEDYPFTLSTGRLLEQFHTGTLTRKTDGLNTLGS
PRVMMSAIDADRLGVNNGDVLTLSTRRGSINIAAFVTRRAQPGVLFLPFHFAEAAANKLT
NNVLDPVAKIPEFKICAVRVEKANEAICWS
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgatagaactcaccttcgacggccaggtcgtcaaagccaaccggggcgaagatctgctc
acctgtgccaaggccgcaggcatagcgatccctaatttatgtcatctgggcaagcaactg
gacgacaaactcgcgggcaaacaagactgcaacctctgctatgtcgaggtgcgagacgaa
aagggcgacttccacacagtcaaggcctgtaagacacaggtcgaggcgccgctcgtggtg
atcacccattcggccgccctcagcaaacgccgtcaggcagcgctgaaacaccttttgagc
gaccacttcgccgactgcgaagccccctgccaacaggcctgtccggccggcgtagacgtg
cagtcctatctgctgcatatcgcccagggcaaccatagagaagcggtcaaggtgatcaaa
caaaccctgccgctgccgctctctatcggccgtgtctgcccggccttttgcgaatcggcc
tgtcgccgcggcgagctggatgagcccttggccattcgtcagctcaagcgtcacgccgcc
gacctggatctggacagtgaagacacctatgtgccgcccaaggcgcccgctaccggcaaa
cgcgtcgccatcataggcagtggcccggcggggatcagcgcgggttactacctctccaat
tcaggccatgaggtgaccattttcgagtccatgcctaaggcgggcggctggctaagatac
ggtatccccgagtaccgtctgcccaagcagatcctggacagagagatagacctactgtgt
caaaatggccttgtgatacagacagatactcgtctcggccgcgacatccaccttaaggag
ctggtcaaccaattcgacgccgtttgcctcgccatcggcgcccagaaggcggtgcccatg
aactacccgggtgtagacctcgaaggctgctacttgggggtggattaccttaaggatcac
agcacagacaacaactaccacacgggccagaaggtggcggtgatcggcggcggcaacacc
gccatcgactgcgcccgcaccgcgctgcgcaagggcgccgaggtgactctgatctatcgc
cgcacccgcgacgagatgccggctgaggtctatgagatagaggaggccgaacatgagggc
gtgcgcttctatttcctcactaaccccatcgaaaaccatggcgacgccaatggccgtatc
aatgccgtcaccttcgagaagatgcgcctgggcgaacccgatgcctccggcagacgctca
cctcaggccacgggcgagaccttcaccgaggcgttcgatacagtgatacccgcggtctcc
cagaccccggacatgaccttcctcgagcatccagagagccagctctccaccggcgaggtg
gccctcacccgctggaacaccttctccggctgtgaacatactatgtcctcaggggtggag
aaactgttcgtactcggggattcgcgcaccggccctgccacggccgtcgccgcggtggcc
gatggtcgcaaggccgccaatgccatcgagaaactactgagcggcgagctgagctgtgag
ctgacacctgcgcccttcaactcccagaagcaggatgagcagaagccagacagccgtcac
ttcccggcccgtcagctacaggccaaggccaagatgccggaactggccatcaacaagcgc
ctggataatttcgacgagattgaactcggcttcaacgacgaggaggcgatgctcgaggcc
gcccgctgcctggagtgtggctgtcaggccaacactgagtgtgccctgcgcgactacgcc
accgagtaccgtgtcgatggcgccgcgctcgataaacagggccaccgcgcctttacccag
gatgccagtacgccttttatcaacttcgaccccaaccgctgcatcagctgcggtgcctgc
gtcgccatgtgccgccagcagtctggccatcaggcgatcagcttcgagcccgacagctat
ctagccctgccccaggagatggccgcaacatacagccgtcaggcgcctcgcgccggattc
aacgccaccatggccgacagccaatgcgtccagtgcggtaactgtgtccaggtctgcccc
acaggggcactgaccgatgccagagacaagcgtcagggggttaaacatgagctgaaacag
acctccaccgtctgcacttactgcggcgtgggttgccgtgtcatcatccatagcgatccc
gtaactggcgagctcaaacgcgtctcgggcgacaaccgctcccaggtcaacgaagggatg
ctctgcgtcaagggccgcttcggtttcgacttcatcaacagccagcaacgcctgacccag
ccgctgctgcgcaaagatggcgagctggccccggtcagctggaatgaagcgatcgactac
ataggcacccagctgggtcgcatcaaggccgaacatggtggcgacgctatcgctggcctg
gcctcggccaaggcgaccaacgaagataactatctgttccaaaagctgtttagaagcgtt
atcggcaccaacaacatagatcattgcgcccgcctatgtcatgcctcgacggtcaccgcc
ctgcaagaaagcctgggcagcggcgccatgaccaatgatattccgtcaataaaatcctcg
gatctcatcttcatcctgggctcggataccgaggccgcccaccccatcatcgcctccaag
atcaaacaggcggtgagccaacacggctctcgcctggtggtggccgaccccaaacgggtg
agcatcgccgacagcgccgagctctacctgcgtcatcgccccggcagcgacgtcatgctg
ctcaacgccatcatgcaggagatcatcaagcagggctggcacgacagcgactacatcagt
cgccgtgtcgaaggattcgacgcactgcgcgccgaggtgatgaaggacgactacagcctg
agtaacgccgccaagatcacaggcgtcgacgcagaggagatagcccagctggcccgcctg
ataggcacggcagagaagaccgccatctactatgccatggggatcacccagcacacctcg
ggacacgacaatgtcaccgccattgccaacctacaactgctgtgcggcaacataggcatc
gagggcgcggggatcaatccactgcggggccagagcaatgtccagggcgcctgtgacatg
ggcgccctgcccaactacttcaccggctaccagaaggtgaccgaccccgaggtgcaagcc
gccttcagacaggcctggcaacaggaatggctaccggatcagataggtctggcggcaacc
gagatgatgcacgccctggcccacggcaggctcaaggccctctatgtgatgggggaaaac
cctgtgctgagcgatcccgatcaggcccatgtgatgcaagggctggagtcggccgagctg
ctgatcgtccaggatatcttcatgacggagacggcccagctggccgacgtggtgttgcca
gccgccagcttcgcagagaagccaggccacttcaccaataccgagcgtcgggtacagcgt
ctgcaggcggccatcgagagcccaggcctggcccgccgcgactggcagatcatcacagat
atcgccaaggccctcggcgccgattggcgctatgaggatgaagcgtccatctggcaggag
ctgacccgcgtcacgccccagtaccgcggcatccaatggcaggacactgaccccagcacg
ccacaaggcctgctgggtaagcaatggccctgccccgagcctggccatgagggcacccgc
ctgatgcataaagagcgctttacccgcgggcttggtaagatgacgcccgtcggctaccgc
ctgccggccgagctgccctgtgaggattatcccttcaccctttccaccgggcgcctgctg
gagcagttccacaccggcaccctgacccgcaagacggacggcctcaataccctgggttca
cccagggtgatgatgtcggccatcgatgccgaccgcttgggggtgaacaacggcgacgtg
ctgaccctgtccacgagacgcggcagcatcaacattgcagcctttgtcacgcgccgcgcc
cagccgggagtgctcttcctgcccttccactttgccgaggcggcggctaacaagctgacc
aacaatgtgctggaccctgtggctaagatccccgaatttaagatctgcgccgtcagggtc
gagaaggccaacgaggcgatctgctggtcttag
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integrated database retrieval system
