Shewanella rhizosphaerae: K0I63_06095
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Entry
K0I63_06095 CDS
T09262
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
srhs
Shewanella rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
srhs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
srhs03009
]
K0I63_06095 (rlmD)
Enzymes [BR:
srhs01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
K0I63_06095 (rlmD)
Ribosome biogenesis [BR:
srhs03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
K0I63_06095 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
PCMT
TRAM
Methyltransf_11
RrnaAD
TRM5-TYW2_MTfase
MTS
Methyltransf_15
DOT1
Methyltransf_23
CMAS
Methyltransf_12
Cons_hypoth95
FtsJ
Methyltr_RsmB-F
TPMT
Ubie_methyltran
DNA_methylase
MetW
PrmA
Motif
Other DBs
NCBI-ProteinID:
QYK14085
LinkDB
All DBs
Position
1376002..1377336
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AA seq
444 aa
AA seq
DB search
MAQFYKAKPRKTQQTQAKQSFHVSQLDHLGAGIAEHQGKIVFIPGALPDETVTAQIVEQK
KRHAKAKLIKVETASAARIEPSCPYYGRCGGCDLQHLELSAQRHIKQAALENLINKMGRT
QPQAMSEPLSGEGWHYRRRARLATQYLRDTKQLNLGFRALASSEVVNIDACPVLAKSLSE
LIAPLNQCLNRLSAKRSLGHVELLSVDSGPCVVLRITSPLNDKDKALLASFGEQHKVRLV
LLDDDSKLETLWGDEGLPFYTLEDGSSLGFSPGNFIQVNGEINQQMVTQAIDWLQIQPGE
RVLDLFCGVGNFTLPLAKAGAQVVGVEGVEAMVAQARRNASMSGVEGAEFYHGDLSADLS
AAAWLGRIDKLLLDPARAGAYESLQWLKKMKPKAIVYISCNPVSLARDCEPLLAQGYQLS
RLGLIDMFPQTHHIEAMALFELEK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggcacaattttataaagctaaaccccgcaagacacaacaaacccaggccaagcaaagt
ttccatgttagccagctggatcatctgggggcggggatagcagaacatcagggaaaaatc
gtcttcattcccggcgcactgccggatgaaacggtcaccgcgcagatagtcgagcagaag
aagcgccatgccaaggccaagctgattaaggtcgagaccgccagcgccgcgcgaatagaa
ccaagctgcccatactatggtcgctgcggcggctgtgacctgcagcatcttgagctttct
gcccagcgccatatcaagcaggcggcgctggagaacctgatcaacaagatgggccgcacc
cagcctcaggccatgagcgagccgctaagcggcgaaggctggcattatcgtcgccgagcc
cgactggcgactcagtatctgcgtgatacaaagcagctcaatctgggctttcgcgcccta
gccagtagcgaggtggtcaatatcgacgcctgccctgtgctggcaaaatctttgtctgag
cttatcgcgccgctgaatcaatgcctcaatcgtctcagtgccaaacgcagcctgggccat
gtggagctgttgtctgtggactctggcccttgcgtggtgctgcgtatcaccagccccctg
aacgataaagataaggctctgctagctagctttggcgagcagcataaggtgaggcttgtc
ttgctcgatgatgacagcaagcttgagaccctctggggggacgagggcctgcccttctat
accctggaggatggcagttcgcttggcttctcaccgggcaactttattcaggtcaatggt
gagatcaatcaacagatggtgactcaggcgatcgactggctacagattcagccgggcgag
cgggtgctggatctcttctgcggtgtaggtaacttcaccctgccgctggccaaggccggt
gcccaggtagtgggcgtcgaaggagtcgaggccatggtggcgcaggcgagacgcaatgca
tccatgagcggcgtcgagggggccgagttctaccacggcgacctgagcgcagatctctcc
gctgccgcttggcttggccgcatcgacaagttactgctggatcctgccagagccggcgcc
tatgagagtctacaatggttaaagaagatgaagcccaaggcgatcgtctatatctcctgt
aatcctgtgagtctggccagagattgtgagccgctactggcacagggttatcagcttagt
cgcctgggcctcatcgatatgttccctcagacccatcacatcgaggccatggccttgttt
gagttggagaaatag
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