Shewanella rhizosphaerae: K0I63_06135
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Entry
K0I63_06135 CDS
T09262
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
srhs
Shewanella rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
srhs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
srhs03016
]
K0I63_06135
Enzymes [BR:
srhs01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
K0I63_06135
Transfer RNA biogenesis [BR:
srhs03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
K0I63_06135
Prokaryotic type
K0I63_06135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-ProteinID:
QYK14093
LinkDB
All DBs
Position
1385452..1386519
Genome browser
AA seq
355 aa
AA seq
DB search
MTPLHYLHGQPEASADLRTFNSDFIVQEILPFLPTGEGEHHMLHIRKEGLNTADVARMLS
SFAGVHPKEVTFAGQKDRHAITEQWFGVRIPGKSMPDWQSLNSEQLTVLSSARHGKKLRT
GALAGNRFTLTLRAVSDMDALVRRIELIKATGVPNYFGEQRFGHDGKNLIFGRQMFSGKK
KVKDRNKRSIYLSAVRSHLFNQVVSERLRLHQLKTLDGDCVMLAGSKSYFVANPWDDALY
GRLAENDIQLSVPMWGRGQALSEAEALAFEQGVCGQYPEDLAGLEQAGLNQERRPLLLAP
QQLSYETQDDTLVIKFALPAGSFATSVLRELVNYQDVKEREYQARKAAASEQAHD
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgaccccactacattatttgcatggccagcccgaggcgagcgccgacttaagaaccttc
aacagcgattttatcgtgcaggagatcttgccattccttccgacgggcgagggcgagcat
cacatgctgcacatccgcaaggaggggttaaataccgccgatgtggcgcgcatgctctca
agctttgccggcgtgcatccaaaagaggtgaccttcgccggccaaaaagacagacacgcc
atcacagaacagtggtttggggtgcgtattcccggcaagagcatgccagactggcagtcg
ctcaatagcgagcagctcaccgtgctatcaagcgcccgtcacggcaagaagctgcgcact
ggcgccctggcgggtaaccgcttcaccctgaccctaagggccgtgtcggacatggacgca
ctggtgcggcgcatcgagctgattaaagccacaggcgtgcctaactattttggcgagcag
cgtttcggccatgacggaaagaacctgattttcggtcgtcagatgttctcgggcaagaag
aaggtgaaagacagaaacaagcgcagcatctatctctcggcggtgcgctcgcatctcttc
aatcaggtggtgagtgagcggcttcgcctacaccagctcaagacactcgatggtgactgt
gtgatgctggccggcagcaagagctacttcgtggccaatccctgggatgatgcgctttat
ggtcgtctggcggaaaacgatattcaactctcggtgcccatgtggggtcggggccaggca
ttgagtgaggccgaggcgttagccttcgagcagggcgtttgcggtcagtatcctgaagat
cttgccggcctcgagcaggcggggctcaatcaggagcgccgcccgctgcttctcgcgccg
cagcagctaagctatgaaactcaggatgacaccttagtgataaaattcgccctaccggct
ggcagctttgccacctctgtgctgcgggaactggtgaattatcaagatgtcaaagagcgg
gaatatcaggccagaaaggccgcagcgagcgagcaagcccatgattaa
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