Shewanella rhizosphaerae: K0I63_11060
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Entry
K0I63_11060 CDS
T09262
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
srhs
Shewanella rhizosphaerae
Pathway
srhs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srhs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
K0I63_11060 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srhs03400
]
K0I63_11060 (recD)
Enzymes [BR:
srhs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
K0I63_11060 (recD)
DNA repair and recombination proteins [BR:
srhs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K0I63_11060 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
Viral_helicase1
UvrD_C_2
AAA_11
NAT10_TcmA_helicase
SH3_13
UvrD-helicase
AAA_22
SLFN-g3_helicase
PhoH
DEAD
nSTAND3
Flavi_DEAD
AAA_28
T2SSE
CbiA
AAA_16
UvrD_C
NTPase_1
Hex_IIIa
SRP54
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
QYK11337
LinkDB
All DBs
Position
2483913..2485901
Genome browser
AA seq
662 aa
AA seq
DB search
MIQLAQPLSQLLKHWQQEGLLTPLDRHFALQMQALHSDGDDLFTLICALLSRQLSQQHTC
LPLTQINRNNPLHEQQPQCQLELSPQALAEQLIQYQAISPADGELNTPLILDGDRLYLQR
YYQFETQVAERLTRLNQPITVAAPDKVASILNILFAGQAEKPDWQRVATATAFSQKLAVI
TGGPGTGKTTTVTKLLLLLCLEQQLTIKLVAPTGKAAARLSESIKASKARLAQELAPYGE
ELDLEQLKQVPEEAATLHRLLGVIPGSHRFRHHKDNPLRLDLLILDEASMVDLPMMHKLL
AALPEHARLILLGDQDQLASVEAGAVLADICAGLKQTDSQESGWRMRYSQEKAALLSQLT
KEDLSVYIDARPALGDSLAMLMHSHRFKGDAGIGQLAGAVNRRDLTGILSVWQKGYGELG
WLEHQLTPQGNAGLTALMAQSVDKYRPYLDLVGHLANKEQAQDVDKEADQQLDLDKIANQ
IITRFNDYRILCAMRAGEYGVEGINAAVTQALKDAQLIQPSSEFYAGRPIIIQSNDYNLG
LFNGDIGVILPAHGSTHRLMAYFVQADGSLLKVLPARLPSHETCYAMTVHKSQGSEFQQV
AFVLPPRPSVAQRQLLTKELVYTAITRAKGHFSCLGSQAVFEAACSQATLRASGLAQRLW
PA
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgatccagctagcacagccacttagccagctgcttaagcactggcagcaggagggacta
ctgaccccattggatcgccactttgccctgcaaatgcaagccctgcacagcgatggcgac
gatctctttaccctgatctgcgccctgctcagccgtcagctatcccagcaacacacttgt
ctgcccctgactcagataaacaggaataacccgctgcatgaacagcagcctcagtgtcaa
cttgaactgtcgccccaggcgctggccgaacagttgattcaatatcaagccattagcccg
gccgatggtgagctaaacacccccttgatcctcgatggcgacaggctctacctgcagcgt
tactaccagtttgagactcaggtggccgagcgtcttacccgcctcaatcagcccatcaca
gttgccgcgccagataaggtagccagcatactgaatattctgtttgccggtcaggcggag
aagcctgattggcagagggtagccaccgccaccgcctttagccagaaactggcggtgatc
accggcgggcccggtacaggcaagaccaccacagtaactaagctattactgctgctctgt
ctggaacagcaactcaccatcaagttggtggcgccaacgggcaaggcggccgcgcgcctg
agcgagtcgatcaaggcctccaaggcgaggcttgcccaggagctggccccctatggtgaa
gagttagatcttgagcagcttaagcaggtccccgaagaggcagctaccctgcaccgtctg
ctgggggtgatccccggctcccaccgattcaggcaccacaaggacaatcctctcaggctg
gatctcttgatcctcgatgaggcctccatggtagatctgcccatgatgcacaagctgctg
gccgcgctgccggagcacgccaggctcatattgcttggcgatcaggaccagctcgcctcg
gtcgaggccggcgccgtgctggctgatatctgcgccgggctaaaacagacagactcacag
gaaagtggctggcgcatgcgctactcacaagagaaggcggcactcctgagtcagttaacc
aaggaagatctcagcgtctatatcgatgcgcgcccggcactgggcgatagtctggccatg
ctgatgcacagccacagatttaagggcgatgccggtataggacagctggccggcgccgtc
aaccgccgcgatctgacgggcatattaagtgtctggcagaaaggttatggagaacttggc
tggcttgagcatcaactcaccccccagggcaatgccggactcacggccttgatggctcag
agcgtcgacaaatatcgtccttatctggacttggtcggtcacctggccaacaaagagcag
gctcaagatgtagataaagaggcagatcaacaactggatctggacaaaatcgccaaccag
atcatcactcgcttcaacgactaccgtatcctctgcgccatgcgcgccggcgaatatggc
gtcgaggggatcaacgcggcggtcacccaggcgcttaaggatgcccagctgatccagcca
tccagcgagttttacgccggacgccctatcatcattcagagtaacgactataaccttggg
ctgtttaacggtgatatcggggtgatcttgccagctcacggctccacccaccgcctgatg
gcctatttcgttcaggccgatggcagcctgctcaaggtgctgcccgcccgcctgcccagc
cacgagacctgttacgccatgacggtgcataagagtcagggcagtgagtttcagcaggtc
gccttcgtcttaccgccaaggcctagcgtcgcccagcgccagctactgaccaaggagctg
gtctacacggccatcacccgcgccaagggacactttagctgtcttggcagccaggcggtg
ttcgaggcggcctgcagccaggcgacccttagggcctcgggtctggcccagaggttgtgg
ccagcatga
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