Shewanella rhizosphaerae: K0I63_11520
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Entry
K0I63_11520 CDS
T09262
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
srhs
Shewanella rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
srhs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srhs03032
]
K0I63_11520 (topA)
03400 DNA repair and recombination proteins [BR:
srhs03400
]
K0I63_11520 (topA)
Enzymes [BR:
srhs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K0I63_11520 (topA)
DNA replication proteins [BR:
srhs03032
]
Prokaryotic type
DNA Topoisomerases
K0I63_11520 (topA)
DNA repair and recombination proteins [BR:
srhs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K0I63_11520 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Zn_ribbon_LysW
Motif
Other DBs
NCBI-ProteinID:
QYK11420
LinkDB
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Position
complement(2600780..2603428)
Genome browser
AA seq
882 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDYIVKSSVGHIRDLPTSSSSDASSSTKSPAEVRKMSP
EEKAKYKAEKAKKALVARMGVDPERGWKAKYQTLPGKEKVVKELQSLAENADHIFLATDL
DREGEAIAWHLQEVIGGDPERYQRVVFNEITKSAIQEAFSHPSQLNTNMVNAQQARRFLD
RVVGFMVSPLLWKKVARGLSAGRVQSVATRLVVEREGEIKAFVPEEFWDIHAELTTLANE
GLKMQVAKFKGDNFNPVNEAQAMVAVNALKDSKYQVTSREVKATSSKPSAPFITSTLQQA
ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDSVRDMIGNEYGDKYLPDAP
IRYGSKEGAQEAHEAIRPSDVNVSASSLSDMERDAQRLYELIWRQFVACQMTPAKYDATR
LTVTAGDYELKASGRTLKFDGWTRVQTALKKKNEEDNTLPMVAEGDVLALEELLPKQHFT
KPPARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVKVENRRFYAEKMGEIVSESLI
GSFEELMSYDFTAGMEQTLDNVAQGQLEWKKVLDNFYKGLTAQLEKAELPPEEGGMRPNE
MVLTDIACPTCGRPMGIRTGTTGVFLGCSGYALPPKERCKTTMNLTPGEEAVSENSEDAE
TDALRAKHRCDVCGTAMDSYLIDEKRKLHVCGNNPICGGYEVEQGQFKIKGYEGPIIECD
RCGNDMELKNGRFGKYFGCTNSECKNTRKLLKNGEVAPPKEDPIHLPELKCTKSDGYFVL
RDGAAGIFLAASTFPKSRETRAPLVEELVKYRELLWPKYQYLADAPVTDDDGNKAVVRFS
RKTKEQYVATEIDGKATGWTAKFVGGKWVSEAKTKPKAKKKA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctagttattgtcgaatcaccggccaaagccaagactattaacaaatat
ctcggcaaagattacatcgtaaaatcgagtgtgggtcacatccgtgatctccctacctca
tcctccagtgacgccagttcgtcgactaaatcgcccgccgaagtgcgcaagatgtccccc
gaagagaaggctaaatataaggcagagaaagcgaagaaagccctggttgcgcggatgggc
gtcgatccagagcgaggctggaaggccaagtatcagaccttgcctggcaaagaaaaagtc
gtcaaagaattacagtcacttgctgaaaatgcagatcatatcttcctcgcaaccgatttg
gatagagagggggaggcaattgcatggcatcttcaagaagtgattggtggggatcctgag
cgctaccagcgcgtggtctttaacgagatcaccaagagcgcgattcaagaggcgttcagc
catccgtcgcagctcaacaccaatatggttaatgcccagcaggcgagacgtttcctcgac
cgcgtggtgggtttcatggtatcccccctgttgtggaagaaagtggcccgtggcctctcc
gcagggcgtgtgcaatcggtagcgacgcgtttggtggtcgagcgtgaaggcgagatcaag
gcgttcgtaccagaagagttctgggacattcatgccgagctgacgaccctcgctaacgaa
gggctcaagatgcaggtggctaagtttaagggggataactttaaccctgtaaacgaagct
caggccatggtggcggttaacgcactaaaagacagtaagtaccaagttactagccgtgaa
gtcaaagcgacttctagtaagccatcggcgccctttatcacctcgacccttcagcaggcg
gccagtacccgtcttggctttggggtgaagaagaccatgatgatggctcagcgtctctat
gaagcgggtcatatcacctatatgcgtaccgactcgaccaatttgagtcaggaagccctc
gacagtgtgcgtgacatgatcggcaatgagtatggcgataagtacttgcccgatgcaccg
atccgttatggcagcaaagagggggcccaggaggctcacgaagcgatccgtccgtccgat
gtgaacgtcagtgccagcagccttagcgatatggaaagagatgcccagcgtctctatgag
ttgatctggcgccaattcgttgcctgtcagatgaccccagccaaatatgatgcgacgcgt
ctgactgtcaccgcaggggattacgaactcaaggccagtggccgtacccttaagtttgat
ggttggactcgggttcagaccgcgcttaagaagaaaaacgaggaagacaacaccctgccg
atggttgccgaaggtgatgtgctcgcattagaagagttgttacctaagcagcatttcact
aaaccaccggcgcgttatagcgaagcatcactggtgaaagagcttgagaagcgtggcatt
ggtcgcccatcgacctatgcgaccattatctcgaccattcaagaccgtggctatgtgaag
gtcgagaatcgtcgtttctacgccgagaagatgggtgagattgttagcgagagcctcatc
ggcagcttcgaagagctgatgagttacgacttcaccgccggcatggaacagaccctggat
aacgtggcccagggccagctcgaatggaagaaggtgctggataacttctacaaagggctg
accgctcagcttgaaaaggccgagctaccgccggaagagggcggcatgcgccctaatgag
atggtgctgaccgatatcgcttgcccgacctgtggacgcccaatgggcattcgcaccggt
actaccggcgtgttcctgggttgttcaggttatgccttgccgccgaaagagcgctgtaag
acgaccatgaacctgacgccgggtgaagaggccgtcagcgagaacagcgaagatgccgaa
accgatgcactgcgcgccaagcacagatgtgatgtttgcggcacggcgatggatagctat
cttatcgatgagaaacgcaagctgcatgtgtgtggtaataaccccatctgcggtggctac
gaggtcgagcaggggcagtttaagatcaaggggtacgaagggccgattatcgaatgcgac
cgctgcggcaacgatatggagctgaagaatggccgcttcggtaagtattttggttgtacc
aacagcgagtgtaagaatacgcgtaaactgttgaaaaatggtgaagtggcgccgccaaag
gaagacccgatccacctgccagagctgaaatgcaccaagtctgatggctatttcgtgctc
agagacggcgccgcaggcatcttcctggctgcgagcaccttccctaaatcccgcgaaacc
cgcgcgcctttagtggaagagttggtgaagtaccgtgagctcttatggcctaagtatcaa
tatctggccgatgcccctgtgacggatgatgacggtaataaggcagtagtgcgctttagc
cgtaagaccaaggagcagtatgtggcaaccgaaatcgatggtaaggcgaccggttggacg
gccaagtttgtcggcggtaagtgggtcagcgaagccaagactaagccaaaagcgaagaag
aaagcctaa
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