Shewanella rhizosphaerae: K0I63_12290
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Entry
K0I63_12290 CDS
T09262
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
srhs
Shewanella rhizosphaerae
Pathway
srhs03030
DNA replication
srhs03430
Mismatch repair
srhs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srhs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0I63_12290
03430 Mismatch repair
K0I63_12290
03440 Homologous recombination
K0I63_12290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srhs03032
]
K0I63_12290
03400 DNA repair and recombination proteins [BR:
srhs03400
]
K0I63_12290
Enzymes [BR:
srhs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K0I63_12290
DNA replication proteins [BR:
srhs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K0I63_12290
DNA repair and recombination proteins [BR:
srhs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K0I63_12290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
CAF1
Motif
Other DBs
NCBI-ProteinID:
QYK14954
LinkDB
All DBs
Position
complement(2771043..2771720)
Genome browser
AA seq
225 aa
AA seq
DB search
MAGIKVRSQLCWRALMAKDAGLKAYQQALMPVIDKPFAEAELLAIDLEMTGLNASFDQIL
SIGVVPIRQGQLILSEAQHKLVQIEGSVGQSATIHGILDTHLDAALTPEQAMAWFLSVSE
GKVLVAHHAPLDLAFLQSGLQACLGEKPRLLAIDTLLLEKQRLLRQQEHLQEGSLRLGRS
RARYGLPVYAAHNALIDALACGELLLAQVAAMGGATKVKIAELLP
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
ctggcagggattaaggtcaggtcgcagctctgttggcgagccctgatggcaaaagatgcc
gggctcaaggcctatcagcaggcgctgatgccggttatcgacaagccattcgcggaggcg
gagctgctggcaatagatctcgagatgacagggctcaatgccagcttcgatcagatctta
agtatcggcgtggtgcctatccgtcaggggcagcttattctcagcgaggcgcagcacaag
ttggtgcagatagagggcagcgtcggccagagcgccaccatacacggcatcttagatacc
catctggatgcggccttgaccccggagcaggcgatggcctggtttttatccgtgagtgag
ggcaaggtgttggtggcccaccatgcgccgctggatctcgccttcttacaatctggcctg
caggcctgtttgggagagaagccgcgcctactcgccatagatactttattgctggagaag
cagcgactactgaggcaacaggaacatctgcaagagggcagtctgcgcctggggcgaagc
cgcgcccgttacggtctgcccgtgtatgcggctcataacgcgctcatcgacgcgctggcc
tgcggcgagttgctgctggcacaggtggcggccatgggcggcgcaactaaggtaaagatc
gccgagctgctgccttaa
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integrated database retrieval system
