Shewanella rhizosphaerae: K0I63_14595
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Entry
K0I63_14595 CDS
T09262
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
srhs
Shewanella rhizosphaerae
Pathway
srhs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srhs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0I63_14595 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srhs03019
]
K0I63_14595 (pnp)
03016 Transfer RNA biogenesis [BR:
srhs03016
]
K0I63_14595 (pnp)
Enzymes [BR:
srhs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
K0I63_14595 (pnp)
Messenger RNA biogenesis [BR:
srhs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K0I63_14595 (pnp)
Transfer RNA biogenesis [BR:
srhs03016
]
Prokaryotic type
tRNA degradation factors
K0I63_14595 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
S1_2
KH-I_KHDC4-BBP
KH_KhpA-B
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QYK11974
LinkDB
All DBs
Position
complement(3350271..3352373)
Genome browser
AA seq
700 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKAEEPGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVVSVD
PEISPEVISMIGTSAALSISGIPFNGPLGSARVGYVDGEYILNPTVSQLENSQLELSVAG
TENAVLMVESEADALPEEVMLGAVVYGHEQQQVVIQAIKELKAEVNKPMWDWTAPVQNEE
LVAKVKDLAEAGLTEAYQIVVKQDRYAQVDVVKTAAKEALLAENPDADAREIDGLLGSLE
KKVVRSRIIAGNPRIDGREPDMVRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKIDSIMGEQTSRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGIHAVMPTAEEF
PYSIRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMQIALQQAYGARVHILNVMDQAI
SGHRAEISDHAPRITTLKINPEKIRDVIGKGGATIRALTEETGTTIELEDDGTVKIASAN
GDATKEAIRRIQEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEERVAN
VSDYLEVGQEVKVKVMEVDRQGRVRLSMKEAQPKEEAASE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaatcgtaaagagttttgaatatggtcagcacacagtcacgctagagactggg
gttattgcacgtcaagcagacgcagctgttttggcaagtatgggcgatacaacagtattg
gttactgttgttggcaagaaagctgaagagccaggtcgtgactttttcccgttaaccgtt
aattaccaggaaaaaacttacgctgcgggtaaaatccctggtggattcttcaagcgtgaa
ggtcgtccatctgaaggcgagaccctcactgcacgtctgattgaccgtcctattcgtcct
ctattccctaatggttttaagaacgaagttcaggtgatcatcactgttgtttctgttgat
ccagaaatcagcccagaagtgatctctatgatcggtacttctgcggctctgtctatctca
ggcattccattcaacggtccactgggttctgctcgtgtgggttatgtcgatggcgagtac
atcctcaacccaacggtttcacagctagaaaacagccaactggaactttctgttgccggt
actgaaaatgcagtacttatggttgagtctgaagccgatgcgctgccagaagaagtgatg
cttggcgccgtggtttacggtcatgagcaacagcaagttgttatccaggcgatcaaagag
ctaaaagccgaagttaacaagccaatgtgggactggacagctccagtacaaaacgaagag
ctggttgctaaggttaaagatttggcagaagcgggtctaaccgaagcttaccagattgtg
gttaagcaagatcgttatgctcaggttgatgtcgttaaaacggcggctaaagaagcatta
ttggctgaaaacccagatgccgatgcacgcgaaattgacggtctgcttggtagcctagag
aagaaagtggttcgtagtcgcatcatcgcgggcaacccacgtatcgatggtcgtgagcca
gacatggttcgtgccctgagcgtgatggcgggcgtactgccacgtactcacggtagtgct
ctgttcacccgtggtgaaactcaggcgctggtgacttgtaccttaggtactgagcgtgac
gcacagaagatcgacagcatcatgggcgagcaaaccagccgcttcatgctgcactacaac
ttccctccatactcagtgggtgaaaccggtatggttggctcgcctaagcgtcgtgaaatc
ggtcacggtaagctggcatggcgtggtatccacgcggtaatgccaacggctgaagagttc
ccatacagcatccgcgtagtatctgagatcaccgaatctaacggttcaagctcaatggcg
tctgtgtgtggtacttcactggcgctgatggatgccggtgtacctatcaagacttcagtt
gctggtatcgccatgggtctggttaaagaaggcgacgatttcgttgtactttctgacatt
ctgggcgacgaagatcacctgggtgacatggacttcaaagtggctggtacccgtgacggt
gttaccgcgctgcagatggatatcaagatcgaaggtatcaccaaagagatcatgcagatc
gctctgcaacaagcctacggtgctcgcgtacacatcctgaatgtgatggaccaggctatc
tcaggccaccgcgccgagatctcagatcacgcgccgcgtatcaccactctgaagatcaac
ccagagaagatccgtgacgtgattggtaaaggcggtgcaactatccgtgcgctgaccgaa
gagactggcaccactatcgagctggaagatgacggtaccgttaagattgcctctgccaac
ggcgatgcgaccaaggaagctatccgtcgtatccaggagatcactgcagaagttgaagtg
ggcactgtctacaacggtaaggttgttcgtatcgttgacttcggtgccttcgtgactatc
ctgccgggtaaagacggtctggtacacatctcgcaaatcgcagaggagcgtgttgccaac
gtctctgactacctggaagtgggtcaggaagtgaaggttaaggtgatggaagtcgatcgc
caaggccgcgtacgtctgtcgatgaaagaagctcagccgaaagaagaagcggcaagcgaa
taa
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