Shewanella rhizosphaerae: K0I63_17095
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Entry
K0I63_17095 CDS
T09262
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
srhs
Shewanella rhizosphaerae
Pathway
srhs02020
Two-component system
srhs02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
srhs00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
K0I63_17095
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K0I63_17095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srhs03021
]
K0I63_17095
Transcription machinery [BR:
srhs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K0I63_17095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
QYK12432
LinkDB
All DBs
Position
3949194..3950681
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AA seq
495 aa
AA seq
DB search
MKASLQLKMGQHLTMTPQLQQAIRLLQLSSLELQQEIQQALESNPLLELDEEQESASIEL
QDDSVGDSFDNKYDDKIELDSSQDNSGVETSDALTQDSMPDELPVDTTWDEVYTASPNSS
SGAMRDDDMPFQGETSEGLYEHLEWQKNLTPFSDNDLAIATAIIDAIDERGYLTQTCEDI
LEAMGDPEIELDEVEAVLKRVQHFDPIGVAARDLSECLTIQLAQYSDDTPHIANARMLIK
EHLDLIAGRDFRLLMRKTKLKENELRDAIALIQTLNPRPGLAITASRDEYVIPDVTVTKK
KGRWVVELNPDSMPKINVNQQYAAMARSTKSQADGQFIRGHLQEAKWFLKSLESRNETLL
KVTNCIVDFQQGFFEFGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFELKY
FFSSHVGTDDGGECSSTAIRAFIKKLVAAENQKKPLSDSKMAQLLAEQGIKVARRTIAKY
REAMLIPPSNQRKSL
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgtcacttcagctcaaaatgggtcagcatctcaccatgacgccccagctacaa
caggccatacgtctgttgcagttgtcgtcattagagttgcagcaggagatccagcaggca
ttagaatccaacccgctactggagttggatgaagagcaggagagcgccagcatcgagctg
caagacgatagcgtcggcgacagcttcgacaacaagtacgacgacaagatagagctggat
tcgagccaggataactcaggggtcgagacctctgatgccctgactcaagactctatgcca
gacgagctgccggtggataccacctgggatgaggtctacaccgcctcgccaaactcaagc
tcgggcgccatgcgcgacgacgacatgccttttcagggcgagaccagcgaaggtctttac
gaacacctggaatggcagaagaacctgacccctttttccgataacgatctggccatcgcc
accgccatcatcgatgccatcgacgagcgcggttacctgacccagacctgtgaagatatt
ctcgaggccatgggcgaccctgagatcgaactcgacgaggtcgaggcggtactcaagcga
gtacaacacttcgaccctattggcgtggcggcccgtgatctcagcgaatgtctgaccatt
cagctagcccaatacagcgacgataccccgcacatcgccaacgcccgcatgctgatcaag
gagcacctggatctcatcgccggacgcgacttccgtctgctgatgcgcaaaaccaagctc
aaggaaaatgagctgagggatgccatcgcccttattcagaccctgaatccccgtcccggt
ctcgccatcaccgccagccgcgatgaatacgtgatcccggatgtgaccgtcaccaagaag
aagggacgctgggtagtcgagctcaaccctgacagcatgcccaagatcaacgtcaaccag
cagtatgccgccatggcccgcagcactaagagtcaggcggatggccagtttattcgcggc
cacctgcaggaagctaaatggttcctcaagagccttgagagtcgcaacgagaccctgctc
aaggtgaccaactgtatcgtcgacttccagcaaggtttcttcgaatttggcgaagaggcg
atgaagcccatggtactgaacgacatcgccgaggcggtggagatgcatgaatccaccatc
tcacgtgtgaccacgcaaaaatatatgcataccccgagagggatcttcgagcttaaatac
ttcttctccagtcacgtcggtaccgacgatggcggagagtgctcttcaacagcaatacgt
gccttcattaagaagctggttgctgcggaaaaccagaaaaagccattgagcgacagcaag
atggctcaactcttggccgaacaggggattaaggtggctagacgcaccattgccaagtat
cgcgaggcaatgcttatacctccctcaaatcagcgcaagagcttataa
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