Shewanella rhizosphaerae: K0I63_17485
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Entry
K0I63_17485 CDS
T09262
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
srhs
Shewanella rhizosphaerae
Pathway
srhs03420
Nucleotide excision repair
srhs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
srhs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K0I63_17485 (uvrD)
03430 Mismatch repair
K0I63_17485 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srhs03400
]
K0I63_17485 (uvrD)
Enzymes [BR:
srhs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K0I63_17485 (uvrD)
DNA repair and recombination proteins [BR:
srhs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K0I63_17485 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
K0I63_17485 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
ResIII
Motif
Other DBs
NCBI-ProteinID:
QYK12506
LinkDB
All DBs
Position
complement(4032240..4034420)
Genome browser
AA seq
726 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVGAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVSGSNMGRMWIGTFHGLAHRLLRTHYQDANLPQSFQILDSDDQL
RLIKRILKSLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPIEQNLLKIYQVYQES
CDRAGLVDFAEILLRAHELWLNKPHILEHYQERFKNILVDEFQDTNAIQYAWIRVLAGST
ANVMIVGDDDQSIYGWRGAQVENLHRFLQDFPAAQTIRLEQNYRSSGNILNASNELIANN
PDRLGKKLWTEDKDGEKIGLYCAFNEMDEARFIVGRITDWQDMGGNLSDCAILYRSNAQS
RVLEEALLHKGMAYRIYGGLRFFERQEIKDAMGYLRLISNKNDDAAFERIINTPTRGIGD
RTLEILRSTARQQELTLWQTCLRLIDEKVLSGRAANAVRGFMDLIVTLQQETAEQSLHRM
TDHVIQASGLKAMYEAEKGEKARARVENLEELVTAARTFVMPEDLEDMGELNAFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFPMVFMAGVEEGIFPSQMAMDEGDRLDEERRLCY
VGMTRAMKQLYITYAESRRIYGRENYARPSRFIKEIPGDYVQEIRMRTSVSAPASSNRFS
QAQSAFNGSAFNDSGFNIGQRVNHPKFGEGKVTNFEGSGAQARVQVDFLDVGSKWLVVAY
ARLETL
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttactcgacggcttaaacgacaaacagcgcgaggccgtcggcgca
ccacaatctagcatgctggtgttggcgggcgcgggcagtggtaagacccgggtactgacc
caccgcatcgcctggctgatgcaggtagagcagcagagtccctattctattctggcggtg
acctttaccaacaaggccgcggccgagatgcgcgagcgtgtggagaaggtgagcggcagc
aacatgggccgcatgtggatcggtaccttccatggcctggcccatcgcctgctgcgcacc
cattatcaagacgccaacttgccccagagtttccagatcctcgactcggacgaccagctc
aggctgatcaagcggatccttaagagcctcaacctggatgagaagcagtatccgccccgt
caggctcagggctacattaacggcaagaaagatcaggggctgagacccaagcatatcgat
gccggtggcttccccattgagcagaatctgctgaagatctatcaggtgtatcaggagtca
tgcgatcgcgccggcctggtggactttgccgagatcttgctaagggcccatgagctgtgg
ctcaacaagccccatattctggagcactatcaggagcgctttaagaacatcctggtggac
gagtttcaggataccaacgccatccagtatgcctggatccgcgtgttggccggcagcacg
gccaacgtgatgatagtcggcgacgacgaccagtctatctatggttggcgcggcgcccag
gtggagaacctacatcgcttcctgcaagatttcccagcggcccagaccatacgtctggag
cagaactatcgctccagcggcaacatacttaacgcctccaacgagctgatcgccaacaac
ccggaccggctaggcaagaagctgtggaccgaggacaaggatggcgagaagattggcctc
tattgcgccttcaatgagatggacgaggcccgcttcatcgtggggcgcatcacggactgg
caggatatgggcggcaacctcagcgactgcgccatcctctatcgctccaacgcccagtcg
cgggtgttggaagaggccctgctgcacaaggggatggcctatcgtatctatggtggcctg
cgcttcttcgagcgtcaggagatcaaggatgccatggggtatctgcggctgatcagcaac
aagaacgacgacgccgccttcgagcgtattatcaacacgccgacccgtggcataggcgac
cgtaccctggagatcctgcgcagcacggcgcgccagcaggagctgaccctgtggcagacc
tgtctgcgtctgatcgatgagaaggtgctctccggccgcgccgccaacgcggtacgtggc
ttcatggatcttatcgttactctgcagcaggagacggcggagcagtcgctgcatcgcatg
acggaccatgttatccaggcttccggcctcaaggccatgtatgaggcggagaagggcgag
aaggcccgcgccagggtagaaaacttagaggagctggtcactgcggcgcgcaccttcgtg
atgccggaagatctcgaagacatgggcgagctgaacgccttcctctcccatgccgcactc
gaggcgggcgagggccaggccgatgccttcaccgatgcggtgcagctgatgaccctgcac
tcggccaagggcctggagttccccatggtgttcatggcaggcgtcgaggagggaattttc
cccagccagatggcgatggatgagggcgataggctggatgaggagcgccgtctctgttac
gtgggcatgacccgcgccatgaagcagctttatatcacctacgccgagtcgcgccgcatc
tatggccgggaaaactatgcccgtccttcacgtttcatcaaggagatccctggcgactat
gtgcaggagatccgcatgcgcaccagcgtgtcggcgccggcgagtagcaacagattcagt
caggcccagtccgcctttaacggttcagcctttaacgattcaggtttcaatatcggtcag
cgggtgaatcatcccaagtttggcgaaggcaaggtgaccaacttcgagggcagcggcgcc
caggccagagtccaggtggatttcctcgatgtaggcagcaagtggctggtggtggcctat
gcccgtctcgagacactgtaa
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