Shewanella rhizosphaerae: K0I63_19350
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Entry
K0I63_19350 CDS
T09262
Name
(GenBank) collagenase
KO
K01387
microbial collagenase [EC:
3.4.24.3
]
Organism
srhs
Shewanella rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
srhs00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
srhs01002
]
K0I63_19350
09183 Protein families: signaling and cellular processes
02042 Bacterial toxins [BR:
srhs02042
]
K0I63_19350
Enzymes [BR:
srhs01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.24 Metalloendopeptidases
3.4.24.3 microbial collagenase
K0I63_19350
Peptidases and inhibitors [BR:
srhs01002
]
Metallo peptidases
Family M9
K0I63_19350
Bacterial toxins [BR:
srhs02042
]
Toxins that damage the extracellular matrix
Hyaluronidases/Collagenases
K0I63_19350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M9
Motif
Other DBs
NCBI-ProteinID:
QYK12845
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All DBs
Position
4448526..4450322
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AA seq
598 aa
AA seq
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MLRQSLCALLLIGPSLLVGCSVTAPGQITPRQIDSIFINELSALPSQQLFSHNNPFLDTA
SLAKAIQAIMQSQDEASLDALLYYLRAFSYFGPMDKLTDTEYTALTDALSRLGNSQLIAQ
APRLQEHFAVTLYRYYGIDDKGNAQRAEQLASLLPLLDRQLQHAAKQAPSQAADYALWET
LRAYGMLLNVARKQPEGALNKQLIAAELDKPLLDFAASALSLRDQQDWPRANAYWALGLY
RLALPSGEEGKLTPAEQALDDAMVRLAEQDVAKRGEAAKTTYTLGYHVNAFAGLEACKAR
SSVCQIPKLSQVLPIRHQCSDSLYILAQDLTPNELSTSCTKLTSQEANFHRLLETMHQPT
ANDNNDALQVVAFKNWSQYNAYGQLLFDIGTDNGGMYIEGTPSNPDNQASFFAYRQFWIA
PEFAIWNLNHEYVHYLDGRFVKYGGFGHFPHKLVWWSEGLAEYVSKGNDNPSTLKVIKAK
LDEAPDLKTIFATEYKDGLDRTYKWSYMAIRFLAEHHPEELVRLSHYLKTDYFEGYEKLL
DQLLAQQSAFSNWLTKQVAQFEEHDTDKAPEINKLNRYAYRDYLMPSHLKLDGAHQHF
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgttgcgtcaatccctctgcgccctcttgctcatcggccccagcctcttggtgggctgc
agcgtcactgcaccaggacagataaccccaagacagatagactcgatctttatcaatgag
ctaagcgccttaccgtcacagcagctcttcagccataacaacccctttctcgataccgcc
agcttagctaaggcaatacaagccatcatgcagagccaggatgaggcgagcctagatgcc
ctgctctattaccttagggcctttagctatttcggccctatggataagctgaccgatacc
gaatataccgcgctgacagacgccttgagccgacttggtaatagtcagttgatcgctcag
gcgcccagattacaggagcacttcgcggtaaccctgtatcgttactatggaattgatgac
aaaggcaatgcccagcgcgccgagcagcttgctagcttgctccccctacttgatcggcaa
ctacaacatgccgcaaagcaagcgcctagtcaggcagcagattatgccctgtgggagaca
ctcagagcctatggcatgctgctcaatgtcgcgcgcaaacagccagagggcgcactcaat
aagcagttgatcgccgccgagctggataagcccctgctcgactttgccgcctctgcacta
agcctgcgtgatcagcaagactggccaagagccaatgcctattgggcattgggcctctat
cgcctagcactccccagcggagaagagggcaagctcaccccggccgaacaggcactggac
gatgccatggtaagactcgccgagcaggatgtcgccaaacgtggcgaggctgccaagacc
acctataccttgggctatcatgtgaacgccttcgccggcctggaggcctgcaaggcccgc
agcagtgtctgtcagatcccaaagctttcgcaagtcttacccatacgccatcaatgttca
gatagcctgtatatcctggcgcaagatctcacccctaatgagctgagtaccagctgcact
aagctcacctcacaggaggccaactttcatcggctgctcgagacgatgcaccagccgacc
gccaacgataacaatgacgcgctgcaggtagtggccttcaagaattggagccaatacaac
gcctacggccaactgctgttcgacataggcacggataacggcggcatgtatatcgaaggc
acgccgtcaaatcccgataatcaggccagcttcttcgcctatcgacagttttggatcgcg
cctgagtttgccatctggaacctgaatcatgaatatgtgcactatctcgacggccgcttc
gtgaaatatggcggcttcggccattttccgcacaagctggtgtggtggtcggaagggctg
gccgagtacgtttccaagggtaatgacaatccatcgaccctaaaggtcatcaaggctaaa
ctcgatgaggcgccggatctcaagaccatcttcgccaccgaatataaggatggcctggat
agaacctataagtggagttatatggccatccgcttcctggccgagcaccacccagaggag
ttggtgcgtctcagccattacctgaagacagattatttcgagggatatgagaagctgctc
gatcaactcttagcgcagcaaagtgctttttcaaactggctaaccaaacaggttgcccaa
tttgaggagcatgacacggataaggcgcccgagataaacaagcttaatcgttacgcctat
cgcgattatctgatgccgagccaccttaagttagatggggcccatcaacatttttaa
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