Serratia rhizosphaerae: FO014_00635
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Entry
FO014_00635 CDS
T07504
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
srhz
Serratia rhizosphaerae
Pathway
srhz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
srhz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FO014_00635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srhz03400
]
FO014_00635
Enzymes [BR:
srhz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FO014_00635
DNA repair and recombination proteins [BR:
srhz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FO014_00635
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
QHA85603
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Position
113088..116564
Genome browser
AA seq
1158 aa
AA seq
DB search
MSISDNRSRSAALTSRYDLPNRAGDLRQLGQLTGSACAVECAEIAERHDGPIMLIAPDMQ
NALRLRDEIQQFTDQMVTTLSDWETLPYDSFSPHQEIISARLSSLYHLPTMARGIIILPV
NTLMQRVCPHEFLHGHALVMNKGQQLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLD
LYPMGSDEPYRIDFFDDEIDSLRIFDVDTQRTLSEVESINLLPAHEFPTDKNAIELFRSQ
WREQFEVRRDAEHIYQQVSKSSWPAGIEYWQPLFFSQPLPSLFSYLPANTLLVNTGNLEN
AAERFWLDVNQRYESRRVDPMRPLLAPDTLWLRVDALFAELKAWPRVALKTEALPVKAGN
TNLDYQSLPDLAVQAQQKAPLDNLRRFIEGFDGSVIFSVESEGRRETLQDLLGRIKLGTS
LIQRLDQADDNGRYMMVGAAERGFLDAMRQRALICESDLLGERVSRRRQDNRRTINTDTL
IRNLAELHPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYAGEDKLYVPVSSLHLIS
RYAGGADENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKAGFAFKHDREQY
QLFCQTFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGK
QVAVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQVLDDAADGKVDIVIGT
HKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM
RDLSIIATPPARRLAVKTFVREYDSLVVREAILRETLRGGQVYYLYNDVENIEKAAERLA
ELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADR
FGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSSDAHKRLEAIATLEDLGAGFALATHDL
EIRGAGELLGEDQSGQMTTIGFSLYMELLESAVDALKQGREPSLEDLTSSQTEVELRMPA
LLPDDFIPDVNTRLSLYKRIASAKHDGELEELKVELIDRFGKLPDATRNLLHSAALRQHA
QTLGIKRIEVNERGGFVEFGEKNRVDPGYLIGLLQSQPQIYRLDGPTKLKFMLDLTDRAK
RLKFIEDLLNACREHTLA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgagcatttccgataaccgtagtcgttccgcagcacttacctcccgctatgacctgccg
aaccgcgcaggggatttacgccagctgggtcagctgaccggttcggcctgcgccgttgag
tgcgccgaaatcgccgaacgccacgacggacctatcatgctgatcgcgccggatatgcaa
aacgccctgcgtctgcgcgatgagatccagcagtttaccgatcagatggtcaccacgctg
tcggactgggaaacgctgccttacgacagcttctcgccgcatcaggagattatctccgcc
cgcctctccagcctgtaccatctgccgaccatggcgcgcggcattattattctgccggtc
aacacgctgatgcagcgcgtctgcccgcatgagttcctgcacggccatgcgctggtgatg
aataagggtcagcagctgtcgcgggataaactgcgcgcccagctggagcaggccggctac
cgcagcgtcgatcaggtgatggagcacggcgagtttgctacccgcggcgccctgctcgac
ctctacccgatgggcagcgacgaaccgtaccgcatcgatttctttgatgacgaaatcgac
agtctgcgcattttcgacgtcgacactcagcgcacgctgagcgaggtcgagtcgatcaac
ctgctgccggcgcacgaattcccgaccgataaaaacgctattgaactgttccgcagccag
tggcgtgaacagtttgaagtacgccgcgacgccgaacatatttaccagcaggtcagcaaa
agcagctggcccgccggtatcgaatactggcagccgctgttcttcagccagccgctgccg
tcgctgttcagctatctgccggcgaataccctgctggttaataccggcaacctggagaac
gctgccgagcgcttctggctggatgtcaatcagcgctatgagagccgccgcgtcgacccg
atgcgcccgctgctggcgccggacaccctgtggctgcgcgtcgacgccctgttcgccgag
ctgaaggcctggccgcgcgtggcgctgaaaaccgaggcactgccggtcaaagcgggcaac
accaatctcgactaccaaagcctgcccgacctggcggtacaggcgcagcaaaaagcgccg
ctggataacctgcgccgctttatcgaaggttttgacggcagcgtgatcttctcggtggag
agcgagggccggcgtgagacgctgcaggatctgctcggccgcatcaagctgggcaccagc
ctgattcagcggctggatcaggccgacgacaacggccgttatatgatggtcggcgccgcc
gaacgcggcttcctcgatgcgatgcgccagcgggcgctgatttgcgaaagcgacctgctg
ggcgaacgcgttagccggcgtcggcaggataatcgccgcaccatcaataccgataccctg
atccgcaacctggcggagctgcatcccggccagccggtggtgcatcttgagcacggcgtc
ggccgctatgtcggcctgaccacgctggaagccggcggcatcaaggcagaatacctgatt
ttgtcctacgccggtgaggacaagctgtacgtgccggtttcctcgctgcatctgattagc
cgctatgccggcggcgccgatgaaaatgccccgctgcataaactcggcggtgacgcctgg
tcgcgggcgcggcagaaagcggcagagaaagtgcgcgacgtcgccgccgaactgctggat
atctacgcacagcgcgcggccaaagccggtttcgcctttaaacacgaccgcgaacagtat
cagctgttctgccagacgttcccgtttgaaaccacgcccgatcaggaacaggcgatcaat
gcggtgctgagcgatatgtgccagccactggcgatggaccgtctggtgtgcggcgacgtg
ggcttcggcaaaaccgaagtggcgatgcgcgccgctttcctggcggtggagaacggcaag
caggtggcggtgctggtgcccaccaccctactggcgcaacagcacttcgacaacttccgc
gaccgtttcgccacctggccaatccgtattgagatgatgtcgcgcttccgcagtgctaaa
gagcaacagcaggtgctggacgacgcggcggacggcaaggtcgatatcgttatcggcacc
cacaagctgctgcagagcgatctgcgctggaaagatttggggctgctgatcgtcgacgaa
gaacaccgcttcggcgtgcgccacaaagagcgcatcaaggcgatgcgcgccgacgtagat
attctgacgctgaccgcgacgccgatcccgcgtacgctgaatatggcaatgagcggcatg
cgcgatctgtcgattatcgccactccgccggcgcgccgtctggcggtaaaaacctttgtg
cgcgaatacgacagcctggtggtgcgcgaagcgattctgcgtgagacgctgcgcggcggc
caggtctactacctgtacaacgacgtggaaaacatcgagaaagcagccgaacggctggcg
gagctggtgccggaagcgcgcatcgccattggccacggccagatgcgcgagcgcgatctg
gagcgggtgatgaatgacttccaccaccagcgctttaacgttctggtctgcaccaccatt
attgagaccggcatcgatattcccagcgccaacaccatcatcatcgaacgggccgaccgc
ttcggtctggcacagctgcaccagctgcgcggccgcgtcggtcgttcgcaccatcaggct
tacgcctacctgctgacgccgaatccgaaagcgatgagcagcgacgcccataaacgcctg
gaagccatcgccacgctggaagatctgggcgccggcttcgcgctggcgacgcacgatctg
gaaatccgcggcgccggcgaactgctgggagaagaccagagcgggcagatgaccaccatc
ggcttctcgctgtatatggagctgctggaaagcgcggtggatgcgctgaaacagggacgg
gagccgtcgctggaagacctgaccagcagccagaccgaggtggaactgcgtatgccggcg
ctgctgccggacgatttcattccggacgtcaacacccgtctgtcgctgtacaaacgcatc
gccagcgccaagcatgacggcgagttggaagaactgaaggtggaactgatcgaccgcttc
ggcaaactgccggatgccacgcgcaacctgctgcacagcgccgcgctgcgtcagcatgcg
cagacgctgggcatcaagcgaattgaggttaacgaacgcggcggctttgtcgagttcggc
gaaaagaaccgcgtcgatcccggttacctgatcggcctgctgcagagccagccgcagatc
taccggctggacggccccaccaagctgaagtttatgctcgatctgaccgaccgggccaaa
cggctgaagtttatcgaggatctgctgaacgcctgccgcgaacatacgctggcgtaa
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