Serratia rhizosphaerae: FO014_01945
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Entry
FO014_01945 CDS
T07504
Symbol
ldtD
Name
(GenBank) L,D-transpeptidase
KO
K21470
L,D-transpeptidase YcbB
Organism
srhz
Serratia rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
srhz00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
srhz01002
]
FO014_01945 (ldtD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
srhz01011
]
FO014_01945 (ldtD)
Peptidases and inhibitors [BR:
srhz01002
]
Cysteine peptidases
Family C82
FO014_01945 (ldtD)
Peptidoglycan biosynthesis and degradation proteins [BR:
srhz01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
FO014_01945 (ldtD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
QHA85834
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Position
complement(398812..400602)
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AA seq
596 aa
AA seq
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MLLKESNRVRRLALSCAIACGLAASLPAWATTSGLSTGSSATTVAQSRAELMSALPRGVT
PHYLAALAPLYAANRMQPMWQDRETVQQFQQQLAELAISGIQPQFNQWVKQLTDPAISDM
GRDIVLSDAMLGYLQFISSIGANGNNWLYSNIPYKLATPPTTVINQWQLAVRQSKTLPYI
ESLAPQHPQYAKMHQALRDLLTDSRPWPHLASGPTLRPGQTSSDIPALREILQRTGMLSA
TDGNIAQSQELSMVNSTAPVVDDDQSVDEEKLRENRAAAVTSEEGGMLQSAASGDSLYSD
DLVEGVKRFQKWQGLSADGLIGVRTREWLNVSPQTRAALLALNIQRLRILPGRVNNGIMV
NIPNYSLVYYRDGSEVLSSRVIVGRPSRKTPLMSSALNNVVVNPPWNVPTTLVREDIVPK
AMRDINYFQKHGYTLLSGWSNDAQVIDPSTIDWSSISARNFPYRIRQAPGATNSLGRYKF
NMPSSDAIYLHDTPNHSLFKKDIRALSSGCVRVNKASVLANMLLQDAGWNDSRVSSTLKQ
GNTTFVNVRGRIPVKLYYLTAWVADDGQPQFRTDIYNYDNTVRSGAQILAQAEKLL
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgttgcttaaagaaagtaacagggttcgacgtctggcgctgagctgcgctatcgcatgt
ggtcttgccgcgtcgttacctgcatgggcaacgacgtccggattgtccactggctcctca
gccacgacggtggcgcaaagccgtgcagagctgatgtcggcgctgccgcgtggtgttacg
ccgcactaccttgccgcgctggccccgctgtacgcggccaaccggatgcagccgatgtgg
caggaccgtgaaacggtgcagcagttccagcagcaactggccgagctggcgatttccggc
attcagccgcagtttaatcaatgggtgaagcagctgaccgatccggcgatcagcgacatg
gggcgtgatatcgtgctgtcggatgcgatgcttggctacctgcagtttatttcttctatc
ggcgccaatggcaataattggttatacagcaatattccttataagttggcgacgccgccg
acaaccgtaattaaccagtggcagctggcggtacgtcagagtaaaacgttgccctatatt
gaatcgctggcgccgcagcacccgcaatacgcgaagatgcatcaggcgctgcgcgacctg
ttgaccgacagccgtccttggccgcatctggccagcggcccgacgctgcgtccagggcaa
accagcagcgacatccccgcgctgcgtgaaattctgcagcgcaccggcatgttgtccgca
actgacggcaacatagcgcagagtcaggagctgtcgatggtgaatagcaccgcgccggtg
gtggatgatgaccagtcggttgatgaagaaaagctgcgcgagaaccgtgctgcggcggtg
acctcggaggaaggcggcatgctgcagtccgctgccagcggcgacagcctgtacagcgac
gatctggttgaaggcgtcaaacgcttccagaaatggcaggggctgagtgcggacggcctg
atcggcgtgcgtacgcgtgaatggctgaatgtgtcgccgcagactcgcgccgcactgctg
gcgctgaatattcagcgcttgcgtattctgccggggcgggtgaacaacggtattatggtc
aatattcccaactactcgctggtttattatcgtgacggtagtgaagttctttcgtcgcgg
gtgattgtcggccgcccaagccgtaaaaccccgttgatgagcagcgcgctgaataacgtg
gtggtcaacccgccgtggaatgtgccgacgactctggtgcgtgaagatattgtgccgaag
gcgatgcgtgatattaattacttccagaaacacggttatacgctgctgtccggctggagc
aacgatgcgcaggtgattgatccgtcaacgattgactggagctcgatctccgcccgcaat
ttcccgtatcgtattcgtcaggcgccgggcgccactaactcgctggggcgttacaaattt
aatatgccaagttcggatgctatttatctgcatgatacgccgaaccatagcctgtttaaa
aaagatattcgcgcgctcagttccggttgcgtacgagtaaataaagcgtccgtattagcc
aatatgctgttgcaggatgccggttggaatgacagccgtgtttcctccacgttgaagcag
gggaataccactttcgtaaatgtacgtgggcgtattccggttaaattgtattatttaacc
gcgtgggttgccgatgacggacagccacaattccgtacagatatttacaattacgataat
acggtgcgatcgggcgcacaaattttggcccaggcggaaaaattgctgtaa
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