Serratia rhizosphaerae: FO014_06090
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Entry
FO014_06090 CDS
T07504
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
srhz
Serratia rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
srhz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
srhz03009
]
FO014_06090 (rlmD)
Enzymes [BR:
srhz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FO014_06090 (rlmD)
Ribosome biogenesis [BR:
srhz03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FO014_06090 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
RrnaAD
Methyltransf_25
PCMT
MTS
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_23
CMAS
FtsJ
DHDPS
Methyltransf_15
DOT1
Motif
Other DBs
NCBI-ProteinID:
QHA86563
LinkDB
All DBs
Position
complement(1263784..1265112)
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AA seq
442 aa
AA seq
DB search
MAQFYSPKRRVTTRQHTQIFTVTVSDLDPFGQGVARHNGKAVFIPGVLPGEQAEIQLTED
KRQFAKGKLKRLLSRSPQRVEPRCPHFGVCGGCQQQHADESLQQQSKAAALGRMIARETG
VSVPQEAVIAGPQYGYRRRARLGLMWQPKRQTLQMGFRQAGSSELVSVTQCPVLAPELER
LLTPLRACLSGLQAVKRLGHAELVLADNGPLLVLRHLDALRPADREALLTFARQNAVTIY
LASDSEQLEKLCGDTPYYQVDGLRLDFSPRDFIQVNDAVNQQMVAQALEWLEIQPDDRVL
DLFCGMGNFTLPLARRAKSVVGIEGVATLVANGQYNAHKNLLSNASFFHQNLEEDVERQP
WAQQGFDKVMLDPARAGAAGVMSHIVKLAPTRVVYVSCNPTTLARDSKTLLSAGYRLARV
RMLDMFPHTGHLESMALFIRQE
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctcccaaacgccgcgtgacgacccggcagcacacacaaatcttc
accgtgacggtgagcgacctcgatcccttcggtcagggcgtggcgcgccacaacggtaaa
gcggtgtttatcccgggcgtactgccgggcgaacaggcggaaattcagctgacggaagac
aagcgtcagttcgccaaaggcaagctgaaacgcctgctgagccgcagcccgcagcgggtg
gagccgcgctgtccgcacttcggcgtctgcggcggctgccaacagcagcatgcggatgaa
agcctacagcagcagagcaaggcggcggcgctgggacggatgatcgcccgcgaaaccggc
gtcagcgtgccgcaggaggcggtaatcgccgggccgcaatacggctatcgccggcgcgcg
cgtctggggctgatgtggcagccgaagcggcaaaccctgcagatgggctttcgtcaggct
ggctccagcgagctggtgtcggtgactcagtgcccggtgctggcgccggaactggagcgg
ctgctgacgccgctgcgcgcctgcctgagcgggctgcaggcggtgaagcgtctggggcat
gccgaactggtgctggcggacaacgggccgctgctggtgttgcggcacctggacgcgctg
aggccggccgaccgcgaggcgctgctgaccttcgcccggcaaaatgccgtaacgatttat
ttggcgtcggacagcgaacaactggagaaactgtgcggtgatacgccgtattatcaggtt
gacgggctacgcttagacttcagtccgcgcgactttattcaggtgaacgatgcggtaaac
cagcagatggtggcgcaggcgctggagtggctggagattcagcccgacgatcgggtgttg
gatctgttctgcggcatgggcaatttcaccctgccgctggcgcggcgggcgaaatcggtg
gtcggcatcgaaggtgttgccacgctggtagcgaatgggcaatataatgcacataagaat
ttgctgagtaatgcgtcgttttttcatcagaatctggaagaggacgtggagcggcagcct
tgggctcaacagggatttgataaggttatgttggatcctgcccgggcgggcgcggctgga
gtgatgtcacatattgtaaaactggcgccgacgcgggtggtgtacgtttcctgtaacccc
accacgctggcgcgcgacagcaaaacgttgctgtccgccggttatcgtcttgcgcgtgtg
cgtatgctggatatgttcccgcacacggggcatcttgaatcaatggcgctgtttattcgt
caggaatag
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