Serratia rhizosphaerae: FO014_20680
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Entry
FO014_20680 CDS
T07504
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
srhz
Serratia rhizosphaerae
Brite
KEGG Orthology (KO) [BR:
srhz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
srhz03016
]
FO014_20680
Enzymes [BR:
srhz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FO014_20680
Transfer RNA biogenesis [BR:
srhz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FO014_20680
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
QHA89206
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All DBs
Position
4424848..4425969
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AA seq
373 aa
AA seq
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MNYTLITTDAGLQQVCEQARTHAQIALDTEFVRTRTYYPQLGLIQLYDGEQLSLIDPLSI
TQWQPFIDLLSDKAVVKYLHAGSEDLEVFLNAFQTLPTPLVDTQILAAFTGRPLSCGFAT
LVAAYMQVELDKSESRTDWLARPLTERQCQYAAADVFYLLPMAGQLVQEVEQAGWTEAAS
NECLLLCQRRSETLAPELAYREMNNAWQLRPRQLGCLQKLAEWRLQQARQRDLAVNFVVR
EENLWAVARHMPTSMGELDALGLSGPEIRFHGKTLLALVAEATALDEDALPAPVANLVEH
PGYKKVFKEIKAAIVAASEQSGLSSELLASRRQINQLLNWHWKLKNSDCQPELINGWRAE
LLAEPLLAILQGY
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatacgttgatcactaccgatgccggattgcagcaggtctgcgaacaggccaga
acacatgctcaaatcgcgcttgataccgaattcgtcagaacgcgcacctattatccgcag
cttggccttatccagttatacgatggtgaacaactctccctgattgatcccttgtcgatt
acacagtggcagccgtttattgacctgctgagcgacaaggcggtggtgaaatacctgcat
gccggcagcgaagatctcgaagtgttcctgaatgcgttccagaccttgccgacgccgctg
gtggatacccagatcctggcggcgtttaccggccggccgctgtcgtgcggattcgccacg
ctggttgctgcttatatgcaggtcgaattggacaaaagcgaatcgcgtaccgactggctg
gcccggccgctgaccgagcgtcagtgtcagtatgcggcggccgatgtgttctatctgctg
ccgatggctggccagctggtgcaggaagtcgagcaggccggctggaccgaggcggcgagt
aacgagtgtctgctgctgtgccagcgccgcagtgaaacgctggcgccggagctggcctac
cgcgaaatgaataatgcctggcagctgcgtccgcgtcagctcggctgtttgcaaaagctg
gccgaatggcggctgcagcaggcgcggcagcgcgatttggcggttaattttgtcgtgcgg
gaagagaacctgtgggcggtggcgcgccatatgccaacctcaatgggggaactggatgca
ctgggcctgagcggcccggaaatccgtttccacggaaaaacgctgctggcgctggttgct
gaggctactgcactggatgaagacgcgttgccggcacctgtcgccaacctggtggagcac
ccgggttacaaaaaggtctttaaggaaatcaaagcggcgattgtcgccgccagcgaacaa
agtggtttaagcagtgagttgctggcgtcgcgtcgccaaattaatcagctgctgaactgg
cattggaaactgaaaaacagcgactgccagccggaattaatcaacggatggcgtgcggag
ttattagccgaaccattattggcaattctacagggttattaa
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