Selenomonas ruminantium subsp. lactilytica: SELR_08550
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Entry
SELR_08550 CDS
T01799
Symbol
addB
Name
(GenBank) putative ATP-dependent helicase/deoxyribonuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
sri
Selenomonas ruminantium subsp. lactilytica
Brite
KEGG Orthology (KO) [BR:
sri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sri03400
]
SELR_08550 (addB)
Enzymes [BR:
sri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SELR_08550 (addB)
DNA repair and recombination proteins [BR:
sri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
SELR_08550 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
WXG100
Motif
Other DBs
NCBI-ProteinID:
BAL82563
UniProt:
I0GP76
LinkDB
All DBs
Position
914012..917596
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AA seq
1194 aa
AA seq
DB search
MTATLDFIIGRSGTGKTHACLTAMQKKMTAEPLGPALILLLPEHMTYKAERELATMMEKN
GQGFFRAYVFGFRRFARQILLETGGGDMPRISDVGRRLLLQKLLLKHQKDKDLTVFARAA
RQRGFTETLSDAIKEIKSYRLTTDTLRQAADMVGTGQERLSGKVRELSTLADEFAAAMDG
RTNDAEDLMNILADKIPQAELMQGAEVWIDGFVFFNPQEMNVLAAILSSAAKVHITLPLT
GEHLPNGQVNFQQPENTNETGLFNRPYRTMENICRLLQEMESGQSGFWQPVTLLTENHRA
KNPALGWLEKTLFGQVAEYSEKVQGLRLVEAANRRIELETVAADILRLVREEDYRYREIG
VLIRNAEDYDGVLPLVFQDYGIPFFQDGKRQSIHHPLAELLRSALEVVQRGWNYENIFRC
LRTGFFPLVRDDVDKLENYVLEFGIRGRKRWLQAEDWRWHRRYSLDTEEEEVDAETQERL
QLIDGLRRQAVEALRIFDQSIRQAENVTDQITALYDFLVALEVPAHLVKWQEVAENEGRM
ADAAEHKQIWEDIMELFDQLVEISGQEKMSLTDFAAVLGDGLDAVNLSLIPPGLDYVTVS
SLDQNSMAGSRAIYILGANAGAMPRRIGEAGMFTDADRLHLADALEKMPAEFGEKPVISR
GSQERSFGERFLLYRGFNEASEYLWISYALADAEGSGLQPASLVGKLKHCFPQLLFWSIP
LEILDRKDMLQLSAPVPAVSGLANALRGQRDEGKMDEFWQDVYNWALKQPDLQRPMKLAL
AGLAPKAPVGEIPTELAQAIYLKGKFLRGSVTQFEKFRQCPFSHFAKYGLKLQERHTYEF
RHMDLGQLLHEVIREYGEMVSRDYDHRWQDVPEERRGDICHELVETIAPRLQSEILLSRP
DYRHYKRRMEATALQAVNHLSAWAAVSEFQPAYFEEGFGHKADKVQLTPLPLGNGFSLSL
KGQIDRLDIHQENPYFLILDYKTGQAAINLFEVYYGLKLQLLVYVLVGQELLKQQDKERL
PAGILYALLHNPLITADKRLSSEEMAAAIKKKLTMPGWVLADMDVIRSIDANLEHIKPQA
KKDGQLDSNTLKKHYIRTQQEFELMLGYVDYILRDTGKAILSGDIQIKPYRNGERTACKY
CDYQVLCGFDPDIEGFAYHDVQDFDEEEMERRMADTIGREDLADAIHQGSTDSH
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaactttagactttatcattgggcgcagcggcacgggcaagacgcatgcctgc
ctgacggccatgcagaagaaaatgacggcagagcctttagggccggcgctgatcctgctc
ttgccggagcatatgacctataaggctgagcgggaactggccaccatgatggaaaaaaac
gggcagggctttttccgtgcctatgtgttcggcttccggcgttttgcccggcagatcctg
ctggaaaccggtggtggggacatgccccgcatcagcgatgtgggaaggcggctcttactg
caaaaattactgctaaagcatcagaaggacaaggatctgacggtttttgcccgagcagcc
cggcagcggggctttacggaaaccctgtccgatgctatcaaggaaatcaaaagctatcgg
ctgaccaccgatacactgcggcaggcggcggatatggtgggcaccgggcaggaacgcctt
tcgggcaaagtgcgggaactgtctacgctggccgatgaatttgcggcagccatggatggt
cgcacgaatgatgcggaagatctgatgaacatcctagcggacaagatcccacaggcagaa
ctcatgcagggcgctgaagtatggattgatggcttcgtgttcttcaatccacaggaaatg
aatgtattggccgccatattgtccagtgcggcaaaggtccatatcactttgccgctgacg
ggggaacacctgccaaatggtcaggtcaattttcagcagccggaaaataccaatgaaaca
gggctgttcaaccgtccttaccgcacgatggaaaatatctgccgcctgctgcaggaaatg
gagtcaggtcagagtggtttttggcagcctgtcacgttgctgacggaaaatcatcgtgcc
aaaaatcctgctttgggctggctggagaagacattattcggccaggtcgcggaatattcg
gaaaaagtacaggggctgcggctggtggaagcggctaaccgccgcatcgagctggagacc
gtggcggcggatatcctgcggctggtgcgggaagaagattaccgctatcgggaaatcggc
gttttgatccgcaatgccgaggattatgatggcgtcctgccgttggtattccaggattat
ggtattcccttctttcaggatggcaagcggcagagcatccatcatcccttggcggaactc
ctgcgttccgcactggaagtggtgcagcggggctggaactatgagaatatcttccgctgt
ctgcgcacgggcttcttccccttggtgagggatgatgtggacaagctggaaaactatgtg
ctggaattcggcatccggggacgcaagcggtggctgcaggcagaggattggcgttggcat
cgccgttattcgctggatacggaagaggaagaagtcgatgcggaaacccaggaacggctg
cagctcattgacggtttgcggcggcaggccgtagaagcgctgcggatttttgaccagtca
atccggcaggcggagaatgtaaccgaccagatcacggctctttatgatttcctagtggca
ctggaggtgcctgcccatctggtcaaatggcaggaggtggctgagaacgaaggccggatg
gcagatgcggcagagcataagcaaatctgggaagacatcatggaattattcgatcagctg
gtggaaatcagcgggcaggaaaagatgagcctgactgattttgcggcggtgcttggggat
gggctcgatgcggtgaatctgtccctgattccaccggggcttgactatgtgacggtatcc
tccctggatcagaacagtatggcgggcagccgggccatctatatcctgggggccaatgcc
ggagccatgccgcggcggatcggtgaagcggggatgtttactgatgcggacaggttgcat
ctggccgatgctttggaaaaaatgcctgcggaattcggggaaaagccggtgatttcccgg
ggcagccaggagcgcagctttggtgagcgcttcctgctttaccgaggctttaatgaggcc
agcgaatacctgtggatctcttatgctctggcagatgcagagggcagtggtctgcagcct
gcctcgttggtggggaaattaaagcactgcttcccccaattgctattctggtctattccc
ttggaaattttggaccgtaaagatatgctacaactgtcggcaccggtgccggcggtgtcc
ggtctggccaatgccctgcgcggccagcgggatgaaggaaagatggatgaattctggcag
gacgtgtacaattgggccctgaagcagccggatctgcagcggccgatgaaactggcactg
gcagggctggcgcccaaagctcctgtaggcgagattcccacggaactggcccaggccatc
tacctcaagggcaaattcctgcggggcagcgtcactcagttcgagaagttccgtcagtgt
cccttcagtcattttgcgaagtacggcctgaaattgcaggaacgccatacctatgagttc
cggcatatggatttgggacagcttttgcatgaggtgatccgggaatacggggaaatggtc
agccgtgattatgaccatcgctggcaggatgtgcctgaggagcgtcgcggggatatctgc
catgagctggtggagaccattgcaccccgcctgcagagtgaaattttgctgagccgtcca
gattatcgtcactataagcggcgcatggaggctacagccttgcaggcagtcaatcatttg
tccgcctgggcagcggtatcagaattccaaccggcttactttgaggagggcttcggccat
aaggcggataaggtgcagctgacaccgctgcctttgggcaatggtttttccctgtccctg
aagggtcagattgaccgtttggacatccatcaggaaaatccctattttctgatccttgat
tataagacggggcaggcagccatcaatctctttgaggtgtattatgggctgaaactgcag
ctgctggtctatgtgctggtggggcaggaattactgaaacagcaggataaggaaagactg
cccgcaggcattctctatgcgcttttgcataatcccctgattacggcggataagcggctc
agcagtgaggagatggcagcagccatcaagaagaagctcaccatgcccggctgggtgctg
gcggatatggacgtcatccgcagcattgatgccaatctggagcatatcaagcctcaggcc
aagaaagatgggcagctggacagcaataccttgaagaaacattacatccgcacgcaacag
gaatttgaactgatgctgggttatgtggactatatcctgcgggataccgggaaagctatc
ctgtccggtgatatccagatcaaaccctatcggaatggggagcgcacggcctgcaaatac
tgtgattatcaggtgctctgtggctttgatccggatattgagggttttgcctatcatgat
gtgcaggattttgatgaggaagaaatggaacgccggatggcggatacaataggaagagag
gatttagctgatgccatacaccaaggatcaacagacagccattga
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