Selenomonas ruminantium subsp. lactilytica: SELR_10640
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Entry
SELR_10640 CDS
T01799
Name
(GenBank) putative helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sri
Selenomonas ruminantium subsp. lactilytica
Pathway
sri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELR_10640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sri03019
]
SELR_10640
03400 DNA repair and recombination proteins [BR:
sri03400
]
SELR_10640
Enzymes [BR:
sri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SELR_10640
Messenger RNA biogenesis [BR:
sri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SELR_10640
DNA repair and recombination proteins [BR:
sri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SELR_10640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BAL82772
UniProt:
I0GPT5
LinkDB
All DBs
Position
1153567..1156059
Genome browser
AA seq
830 aa
AA seq
DB search
MSFLEYLHSRQDFYRNKNDRYGEAVCERLMARFPVDNCSPTADFYASFRSFLGYEQQPAV
LPEKWVSEEVCHRFGLVSYGKDGWGISNQYKDERLNAAFVDCVFQHLKASAEDNQEFCLL
TSPDIRYLTGYKAYNGLSQQLAMEAALTMQEGDTGLFCLPTGSGKSLITQAIAYQKPGLT
IAVVPTVSLALDQVRSAYSALQAAGEDEILCYYSDMPDEEFSRLYGSLMEQRARLIFLSP
ESMLGSFYQDIRNAAEDGYLQNIVVDEAHMLLEWGASFRPDYQLLKTNQKALREISSSLR
TYLLSATFDHEETDLLRDMFAPDGEHWLEVRCDALRAEPLFNVIRCEDGEDKKKSVQRLC
DLLPRPLIVYVRRPCEAECLAESLRENGYRYVRTFTGDTTGKERSSIINDWQENRLDFLV
ATSAFGMGVDKNDIRTVLHAYVPESPNAYYQEVGRGGRDGNYCLAVMCVNLGNDEDNDLT
GKDGAAGFAEGKAITVEHLCGRWLTMFGKAKKGETEGDVIYGLNTLLVPAYAQNKTTNDL
HVQWNIRTLLLLERQRLLRIEHVEPLDVHRFSLVRRTAYRIWVRILDSCLLNLQVTTAEL
ENIREQEVLYHKNKYQKMATTLARIGKRCWSDLFTATYDMADACCTGCDKHRQVRKYYPN
QGLPLRQNVLAQREYLPKDTVANLLQGQREALITAPKHYWETAARLAKNCRALVLMDDFR
TSLGDLLSDTLWPLMKANNHLFILDRNELRLLAEGGLDCSGYLSGCFLILYNNTAENLPQ
ALLMTRNLLQRVPGWRALHLLYADCLVPGTGRRLTEHITGPVYDEKALPI
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgagctttctagaatatttgcattcaagacaggatttttatagaaacaaaaatgatcgt
tatggtgaggccgtttgtgaacgcttgatggctcgtttcccagttgacaattgttcaccc
acggcagatttttatgcttcttttagaagttttcttggttatgaacaacaaccagctgtc
ttgccggaaaagtgggttagtgaggaggtttgtcatcgttttggtttagtcagttatggt
aaagatggctggggaatttctaaccaatataaggatgaacggctcaatgctgcttttgtc
gattgcgtctttcagcacctaaaagcttcagctgaagataaccaggaattttgcttgctt
acatcacctgatattcgttatttgacaggttataaagcttacaatggcttatcacagcag
ctggctatggaagcggcacttactatgcaggagggggatacgggcttattttgcttacca
acaggttctggtaaaagtcttattacgcaggctattgcgtatcagaaacctggtctgact
attgctgtagtaccaacagtctcactagctttggatcaggtacgttctgcttatagcgcg
ttgcaggcggctggagaggatgagattctttgttattattcggatatgcctgacgaggag
ttctctaggctttatgggagtctaatggaacagcgtgctcgtttgattttcctttcgcct
gaatcgatgttaggaagtttttatcaggatataagaaacgcagctgaagatggatattta
cagaatattgtagtggatgaggcgcatatgctcttggagtggggcgcatcttttcgccca
gattaccaactcttaaagactaatcaaaaagcactgcgtgaaatatcctctagcctaaga
acatacctgttatcagctacctttgatcatgaagagactgatttattacgtgatatgttt
gcaccagatggtgaacactggctggaggtgcgttgtgatgccttgcgtgctgaaccactt
tttaacgtaatccgctgtgaggatggggaagataagaagaagtcagtgcaaaggttgtgt
gatttactgccacgtccgttaatcgtctatgtacggcgtccgtgtgaggcagaatgtttg
gctgagagccttcgtgaaaatggctatcggtatgtgcgtacgttcacgggtgatacaacg
gggaaggaacgatcatcgattattaatgattggcaggaaaatcgattggattttctggtg
gctacatcagcttttggcatgggagtagataagaatgatatacgtaccgtacttcatgcc
tatgtgccggaaagtcctaacgcctactatcaggaagttggtcgtggtggtcgggatgga
aattattgcttggcggtaatgtgtgtaaatcttggtaacgatgaggataatgatcttact
ggtaaagatggcgcggccggtttcgctgaagggaaggccataacggtagaacatttatgt
ggtcggtggctgacaatgtttggcaaggcgaaaaagggcgaaactgagggcgatgtcatt
tatgggctcaatacattacttgtgccagcttacgctcagaataaaacaacaaatgattta
catgtacaatggaatattcgcacattgttgcttttggaacgtcagcgtttgcttagaata
gagcatgtggaaccgttggatgttcatcgcttttctttggtcaggagaactgcttatcgt
atttgggtacgaatcttggattcatgcctgcttaatttacaggtgaccacggctgaattg
gaaaatatacgtgagcaagaagttctatatcataagaacaagtaccagaaaatggcaaca
acattagcaaggattggtaaacgctgttggtctgatttgtttactgctacttatgatatg
gctgatgcttgttgtacaggatgtgataagcatcggcaggtgcgaaaatattatcctaat
caggggctacccttacgtcagaacgtactggcacagagagaatacttaccaaaagatact
gttgctaacttgttgcaagggcaacgtgaagcacttattactgcgccaaagcattattgg
gagacagctgctcgcttagctaaaaattgcagagcgttagtgttgatggacgatttccgt
acatcattaggagatctattgtcagatacgctttggcctttaatgaaagctaataatcat
ctatttattttagataggaatgaactgcgtctcctagcagaaggggggctggactgtagt
ggttatttgtccggatgtttcttgatattgtataataacacggcagaaaatctaccacag
gcattgcttatgactcgtaatcttttgcaacgcgtaccggggtggcgggcattacattta
ctttatgctgattgtctagttcctggaaccgggcgtcgcttgacagaacacattacaggc
cctgtttatgatgagaaggctttgcctatatga
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