Selenomonas ruminantium subsp. lactilytica: SELR_15540
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Entry
SELR_15540 CDS
T01799
Symbol
pnp
Name
(GenBank) putative polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sri
Selenomonas ruminantium subsp. lactilytica
Pathway
sri03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sri00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SELR_15540 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sri03019
]
SELR_15540 (pnp)
03016 Transfer RNA biogenesis [BR:
sri03016
]
SELR_15540 (pnp)
Enzymes [BR:
sri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SELR_15540 (pnp)
Messenger RNA biogenesis [BR:
sri03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SELR_15540 (pnp)
Transfer RNA biogenesis [BR:
sri03016
]
Prokaryotic type
tRNA degradation factors
SELR_15540 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
BAL83262
UniProt:
I0GR75
LinkDB
All DBs
Position
complement(1620092..1622161)
Genome browser
AA seq
689 aa
AA seq
DB search
MQSFEMELGGRKLTIETGKLAKQANGAAFVRYGDTVVLVTATASAEPREGVDFFPLTVDY
EEKMYAAGKIPGGFIKREGRPSSDAILCARLIDRPIRPLFPKGYRNDVQIVATVMSVEQD
NAPELAAMIGASAALCISDIPFMGPIAGVRVGRVNDEFVINPTEEQRKVSTLNLTVAGSK
DAVMMVEAGANELPEDVILDAILYGHQEIKRIVAFQEEIQQACGKEKRITKLFTVPEELE
AAIREYAKDRLDEATRNPDKLDRDAHIAEVNADTMEHFLVEYPEMDKEIAMALHDLEKEI
VRHMITHEKIRPDGRGLEEVRPVSCEVGLLPRAHGSGLFTRGQTQIMTVTTLGPMSDEQI
IDGLGPETTKHYIHHYNFPGYSVGEAKPIRSPGRREIGHGALAERALVPVIPSTEEFPYT
IRLVSEVLESNGSSSMGSVCGSTLSLMQAGVPIKRPVSGVAMGLVKEGDAYTILTDIQGM
EDALGDMDFKVAGTENGVTAIQMDIKVAGIDRNILSSALQQAKRGRAFILGKMLEVIDKP
NEDLSPYAPRVETMQIKVDKIRDVIGTGGKVVKGIIDATGVQIDIHEDGNIFIFSADAEG
MKKARQMIEDIVKEVEVGEVYTGTVTRLMKFGAFVEVLPGKEGLCHISQLAKRRVENVED
VVQVGDQLEVKVVEIDDKGRVNLSHKVLL
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagttttgaaatggaactgggcggccgcaagctgacgattgaaaccggcaaactg
gcaaaacaggccaacggcgctgccttcgtccgctatggtgatacggtggtgctcgtcacg
gctaccgcatccgctgaaccccgcgaaggcgtggatttcttcccgctgacggtggattac
gaagaaaagatgtatgctgcaggcaagattcccggcggctttatcaagcgtgagggccgt
ccttccagcgacgccatcctctgtgcccgcctgattgaccgtcccatccgcccgctgttc
cccaagggctaccgcaatgatgtgcagattgtggctacggtaatgtccgttgagcaggac
aatgctccggaactggctgccatgattggtgcgtctgctgccctctgcatctccgatatt
ccgttcatgggtccgattgctggtgtgcgtgtcggccgcgtgaatgatgaattcgtcatc
aaccccacggaagaacagcgcaaggtttccacgctgaacctcaccgttgccggctccaag
gatgccgtgatgatggtggaagctggtgctaacgagctgccggaagatgtgatcctcgat
gccatcctctatggccatcaggaaatcaagcgcatcgtggcgttccaggaagagatccag
caggcctgcggcaaggaaaagcgtatcaccaagctcttcactgtgcctgaagaactcgaa
gctgccattcgtgaatacgccaaggacagacttgacgaagcaacccgcaatccggacaag
ctcgatcgcgatgcccatattgcggaagtcaatgccgataccatggaacatttcctcgtg
gaatatccggaaatggacaaggaaatcgccatggccctgcatgatctggaaaaagagatc
gtgcgccatatgatcacccatgaaaagatccgtccggatggccgtggcctcgaagaagtg
cgcccggtcagctgcgaagtaggtctgttgccccgtgcacatggttccggcctgttcacg
cgcggccagacgcagatcatgacggtgaccaccttagggccgatgagcgatgaacagatc
atcgatggccttggccccgaaaccacgaagcactatatccatcattacaacttccccggc
tattccgtcggcgaagcaaagcccatccgcagcccaggccgccgcgaaatcggtcatggt
gcactggcagagcgcgctctggtaccggtcattccctccacggaagaattcccgtacacc
atccgcctcgtttcggaagttctggaatccaacggttccagttccatgggttccgtttgc
ggcagcaccttgtccctgatgcaggccggcgtgcccatcaaacgtccggtttccggcgtg
gctatgggtctggtcaaagaaggggatgcctacacgatcctgaccgatatccagggcatg
gaagatgcgctgggcgatatggacttcaaggtggccggtacggaaaatggtgtcaccgct
attcagatggatatcaaggtggctggtatcgaccgcaacatcttgtcttctgctttgcag
caggctaagcgtggccgtgccttcatcctgggcaagatgctggaagtcatcgataagccc
aacgaagacctgtctccgtacgctccgcgtgtggaaaccatgcagattaaggtggacaag
atccgtgacgtcattggcaccggcggcaaggtggtcaagggcatcattgatgctaccggc
gtacagatcgacatccatgaagacggcaatatcttcatcttctccgccgatgcagagggc
atgaagaaagcccgtcagatgatcgaagacatcgtcaaggaagttgaggtcggtgaggtc
tacaccggtaccgtaacccgcctgatgaagttcggcgccttcgtggaagtcctgccgggc
aaggaaggtctctgccatatctcccagttggctaaacgccgcgtggagaatgtggaagat
gtggtacaggttggtgaccagctcgaagtcaaggtcgtggagattgatgacaagggccgc
gtaaacctcagccataaagtattgctgtaa
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