Selenomonas ruminantium subsp. lactilytica: SELR_18810
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Entry
SELR_18810 CDS
T01799
Symbol
rpoD
Name
(GenBank) putative RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sri
Selenomonas ruminantium subsp. lactilytica
Pathway
sri02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sri00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SELR_18810 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sri03021
]
SELR_18810 (rpoD)
Transcription machinery [BR:
sri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SELR_18810 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
EAP30
HTH_20
Astro_VPg
Motif
Other DBs
NCBI-ProteinID:
BAL83589
UniProt:
I0GS52
LinkDB
All DBs
Position
complement(1938115..1939257)
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AA seq
380 aa
AA seq
DB search
MADAKKKGVAQAEAGSKNHSSQIVENLLSKGNKNGGTLTYGELVEALQQEDLTPDEIDRM
YDTFSQQGIEIVDDSSTTDVGDDDIDIDDKDAEEVEIDLSVPEGISIDDPVRMYLKEIGR
VPLLTADEEVALAKRMQEGDEIAQKRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGL
IKAVEKFDYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQ
QLGREPSPEEIAKEMDISVERVREIMKIAQEPVSLETPIGEEEDSHLGDFIEDQDAPAPA
DAASFMLLKEQLEEVLDTLTPREEKVLRLRFGLDDGRARTLEEVGQSFGVTRERIRQIEA
KALRKLRHPSRSRKLKDFLD
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgcgaaaaagaagggtgtcgcgcaggctgaggctggcagtaagaaccacagt
tcgcagattgtggaaaatctgttgtccaaaggaaacaaaaacggtggtacattgacttat
ggggaactcgtagaagctctccagcaggaagacctgacccctgacgaaatcgaccgcatg
tatgataccttcagccagcagggtatcgagattgtggatgattcctctactacggatgta
ggggatgatgatattgacattgacgacaaggatgcagaagaggtcgaaatcgatctctcc
gtgcccgagggcatcagcattgatgatcccgtgcgcatgtatctgaaggaaatcggccgc
gtgcctttgctcacggctgatgaggaagtggcactggccaagcgcatgcaggagggcgac
gagattgcccagaagcgtctggcagaagccaacctgcgccttgtggtcagcatcgccaag
cgctatgtgggccgcggcatgttgttcctggatctgattcaggaaggtaacctgggcctt
atcaaggcggtggagaagtttgactataccaagggctataagttcagtacctatgcgacc
tggtggattcgtcaggccatcacccgcgccattgctgaccaggcccgtaccatccgcatt
ccggtgcatatggtggagaccatcaacaagctgatccgcgtatcccgtcagctcctgcag
cagctgggccgcgaaccgtcgccggaagaaatcgccaaggaaatggatatcagcgtggaa
cgtgtccgggagatcatgaagatcgcccaggaaccggtatccctggaaacgccaatcggc
gaagaggaagattcccatctgggcgacttcatcgaggatcaggatgcaccggcaccggct
gatgcggcttccttcatgctcctcaaagagcagctcgaagaagttcttgataccctgacg
ccccgtgaggaaaaggttctgcgcctgcgcttcggcctcgacgatggccgggcccggacg
ttggaagaagtggggcagagtttcggcgttacccgtgagcgtatccgccagatcgaagcc
aaggctttgcgcaagctgcgccatccgagccgcagccgcaagctgaaggatttcctggac
taa
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