Selenomonas ruminantium subsp. lactilytica: SELR_19310
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Entry
SELR_19310 CDS
T01799
Name
(GenBank) putative helicase UvrD/REP/exonuclease family protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sri
Selenomonas ruminantium subsp. lactilytica
Pathway
sri03420
Nucleotide excision repair
sri03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SELR_19310
03430 Mismatch repair
SELR_19310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sri03400
]
SELR_19310
Enzymes [BR:
sri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SELR_19310
DNA repair and recombination proteins [BR:
sri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SELR_19310
MMR (mismatch excision repair)
Other MMR factors
SELR_19310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
RNase_T
AAA_19
UvrD_C_2
AAA_30
AAA_11
DEAD
AAA_12
DEDDh_C
ResIII
Viral_helicase1
PhoH
Motif
Other DBs
NCBI-ProteinID:
BAL83639
UniProt:
I0GSA2
LinkDB
All DBs
Position
complement(1989935..1992523)
Genome browser
AA seq
862 aa
AA seq
DB search
MELQELNKEQKAAVEELEKNILLLAPAGTGKTNTLACRIAHIIEENRAMPEEILCLTFTN
KACREMRERVEVRAGENGRRVMVKTFHGFCYEVIKAEAKRHADLFTDFTIFDESDCQGLL
KEIVDEEWPLRAVQNLVNQLKEKKAEYAIASGNLQQDYEETLRKLVKEDAQSVKNLAIDD
SYHFHQRLYEGWQIWGAEKTALYDERLHELHGLDFTDLLVQVDELFRQDEVAAKWARRFV
YINIDEVQDTSLLEYRIISQIFGTSRLLLCGDYFQTIYEWRGSHPEVVLRRFQQDYQPRR
IVLHENYRATQVLLNASFDWLRNYFPERVNLLYPDGLQAVSHDYGQPIVLKGAADFSEEA
QWIYYTIQQLPVENYSRVCILTRSNRYNKELSAHFRALGRFLPDNERLPFMLIDEQKFFR
RQEVKDALAVLKLAVNKHDVASLVRVLNRFAKGIGPATIKKLSSDEIRSAGIRLTDFVEA
EARQAGDPYAGLLQAIEAENVIVFDVESTGVDTTRDEIVQIAGIRLGKDGSVKEKFVRLL
KPLTKVGDSFKVHGFSDAQLAAEGEDPKKVLQDFCDFARGAVLVGHNVTYDLRILGSELS
RLDMPQLDYPQFYDTLDIFRRFYPNLPNHKLEFLGKYCQVSHPSSHDAFDDIMATAEILL
YAVERDLRPHAAERREIMSKYQDLFTEWAEKLTEVRHQASRLRPWQLLGKIVLDFGMKDY
YEAHKEPQRVEHLRDLFRQARDLDDEAIRPLDAIERFLRYTTLSNTELDTLTKKPQIPII
TIHQAKGSEFDYVFLAGLQEGTFPSMQAEKSKRLEEEARLFYVGLTRAKKQLFLSWSQSL
YGHWRHISRFLQILPRKYVQNA
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggaattacaggaattgaacaaggaacaaaaagcagccgtagaggaactggagaagaat
attctcctgctggcaccggctgggacgggcaagaccaataccctggcctgtcgcattgca
catatcattgaagaaaacagggccatgcccgaggaaatcctctgtctgacctttaccaac
aaggcctgccgggaaatgcgggagcgggtggaggtccgggccggggaaaatggccggcgg
gtgatggtcaagaccttccatggcttctgctatgaggtcatcaaggccgaggccaagcgg
catgcggatctctttacggattttacgatatttgacgagtcagactgccaagggctattg
aaggaaatcgtggatgaggaatggcccctgcgagcggtgcagaatctcgtgaaccagctc
aaggagaaaaaggctgagtacgccattgccagcggcaatctgcagcaggattatgaggaa
actttgcgcaagctggttaaagaggatgcgcaaagcgtgaagaatctggccattgatgat
tcctatcacttccatcagcggctttacgaagggtggcaaatttggggggcggagaagacc
gccctttatgatgagcgactccatgagctgcatgggctggattttacggatcttttggtg
caggtggatgaactgttccggcaggatgaggtggcggcaaaatgggcgcggcgctttgtc
tatatcaatatcgatgaggtgcaggacacgagcttgcttgagtaccgcatcatttcccag
attttcggcacaagccgcctgcttctatgcggggattattttcagaccatctatgagtgg
cgaggctctcatccggaggttgtactgcgcaggttccagcaggactatcagccccgccgc
attgtgctgcacgaaaactaccgggccacgcaggtgttgctgaatgcctcgtttgactgg
ctgcggaactatttcccggagcgggtgaatctgctgtatccggacggcttacaggcagta
agtcatgactacggccagcccatcgtgctcaagggggcggcagatttcagcgaggaggcg
caatggatttactacacgatacagcagctgcccgtggaaaattattcccgggtgtgcatc
ctgacgcgcagcaatcgctataacaaggaactgtcggcacatttccgcgctttggggcgg
ttcctgcccgataacgagcgtttgcctttcatgctgattgacgagcagaagttcttccgg
cggcaggaggtcaaggatgcgctggcggtgttgaaactggcggtcaacaagcacgatgtg
gccagtctcgtgcgggtgctgaaccgttttgccaagggcattggcccggcgaccatcaag
aagctgtccagtgatgaaatccgcagtgcgggtatccggctcacggattttgtggaggct
gaagcgcggcaggccggcgatccctatgcgggacttttacaggctattgaagcagaaaat
gtgattgtcttcgatgtggagtccacgggggtggacacgacgcgggatgaaatcgtgcag
attgcgggcatccgactgggcaaggatggctcggtgaaggaaaaattcgtgcgcctgttg
aagcctctgaccaaagtgggagattcgttcaaggttcatgggttttccgatgcgcaattg
gcggccgaaggggaagatcccaaaaaggtcttgcaggatttctgcgactttgcccgcggg
gccgtgctcgtagggcataatgtcacctatgacctgcgaatcctgggcagcgaactgtcg
cggctcgatatgccgcagctggattatccgcagttctatgatacgctcgatatcttccgg
cgcttctatccgaacctgcccaaccacaagttggaatttttgggcaaatactgtcaggtc
agccacccgtcttctcatgatgcctttgatgatatcatggcgacggcggaaatcctgctc
tatgccgtggaacgggatttgcggccgcatgcagcagaacgtcgggaaatcatgagcaaa
tatcaggatctgtttaccgaatgggcggaaaaactgactgaggtccgccatcaggcaagc
cgtctgcggccttggcagctcttggggaagatcgtgctggactttggcatgaaggattat
tacgaggctcataaggagccgcagcgcgtggaacatctgcgggatttgttccggcaggca
cgtgacctcgatgatgaggccatccgtccgctggatgccatcgagcgcttcctgcgctat
acgacactgtccaatacggaactcgataccctgacgaaaaagccgcagattcccattatc
accatccatcaggccaagggttcggagtttgactatgtgttcctggcaggtttgcaggag
gggaccttcccgagcatgcaggcggagaaaagcaagcggctcgaggaagaagcacggctg
ttttatgtggggctgacgcgggcgaagaagcagctgttcctgtcctggtcccagtccctc
tatggccattggcgccatatcagcagattcctgcagatcttgccacggaagtatgtgcag
aatgcgtaa
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