Selenomonas ruminantium subsp. lactilytica: SELR_21900
Help
Entry
SELR_21900 CDS
T01799
Symbol
mfd
Name
(GenBank) putative transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sri
Selenomonas ruminantium subsp. lactilytica
Pathway
sri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SELR_21900 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sri03400
]
SELR_21900 (mfd)
Enzymes [BR:
sri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SELR_21900 (mfd)
DNA repair and recombination proteins [BR:
sri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SELR_21900 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
SecA_DEAD
AAA_30
DUF7219
RA_3
Motif
Other DBs
NCBI-ProteinID:
BAL83898
UniProt:
I0GT11
LinkDB
All DBs
Position
complement(2273504..2276851)
Genome browser
AA seq
1115 aa
AA seq
DB search
MNSLFAALGSNAGVKKLQACMQAAPQETLIYGLSNSQKHAILASAYEQAPQPMVIIVHSM
EALQDWREDLLSLLPGTEVLELPELDMMTVQAQARSMERSARRMDVLVRLMRKDPVIVLA
KATAAVQKGISRQDFARLSVSISMGDEIPLEKLLQRLVQLGYEHADEVERIGQFSSRGGI
VDVYPINGENPLRIEFFGDEIDSLREFDLESKRSLKNINSGTIMPLAQTDSAGQAEVFLS
YLEGKGAVLFDEPTRLREQMRTMVRENPDIKGKVFSWETIQEAAKENRVLYTAMLLQQVH
GAEPQQTISFTAPNVASFQRQMDLLMDEISRWLVQKQRILILLSEKSKADSLRELLARHR
YPSLVIDAGTELRHDCVNIQVGRLINGFEMAAASLVVVTEKDIFGHAKRRAIRKESKGEK
LSHFRDIKPGDYVVHSAHGIGKYIGVETLDVGGIHKDYLHIKYGGDDKLYVPTEQVNLLQ
KYIGAEGEVPRLHRMGGTEWAKAKARAKKSVEDIAKQLIEIYAKRRQAKGFAFAPDDSSQ
HDFEDAFPYQETDDQLKAIAEIKADMEKEKPMDRLLCGDVGFGKTEVAIRAAYKAAMDGK
QVAVLVPTTVLAQQHFQTFNARFMEFAPKVDVICRFRTLKEQKQTIEKVKMGQVDILIGT
HAILNQNKVQFKNLGLLIVDEEQRFGVKQKDKIRKLSAGIDVLTLSATPIPRTLHMSLVG
ARDMSIIETPPADRFPVQTYVVEDNDAIIAGAIKREIKRGGQVYFVYNRVDTIDRMREKL
EALVPDARIQTAHGQMPEALLERVMMDFYEGEYDILLATSIVENGLDVANANTIIVYNAD
HFGLSQLYQMRGRVGRSHHMAFAYFVYQADKILTETAEKRLQAMKEFAELGAGFKIAMRD
LEIRGAGNLLGSQQHGHIASVGFEMYCKLLEEAVDKLQHGEKEVAEVQPDPIIDLQVEAY
IDGDYVSDAMHKIEIYQRIAAIRSNEEIKYLLDELIDRFGEPSQAVMNLLEVARIKNYAR
ELKIRTIAELPKALDLYILPGHRLPAKGLIAVDKVLGRSMRSLPGKNGYRFALQDSQKKK
ILNFVLRLLLLAKGEEEAALQDGSAKGKTPKKVKK
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgaattctttatttgctgctctgggcagcaacgccggggtgaaaaaactccaggcctgt
atgcaggctgcgccccaggaaacattgatatatggtctttccaactcccaaaaacatgca
attctggcttctgcctatgagcaggctcctcagccaatggtcatcatcgttcatagcatg
gaggccttgcaggattggcgggaggatttgttgtccctgctgccgggcacggaagtcctc
gaactgccggaactggacatgatgactgtgcaggcccaggcccgcagtatggaacgctct
gcccgccgtatggatgtgctggtccgtctcatgcgcaaagatccggtgatcgtgctggcc
aaggccacggctgcggtacagaagggcatcagccggcaggactttgcccggctcagcgtc
agcatcagcatgggcgatgaaattccgctggaaaagcttttgcagcggttggtccaattg
ggctatgaacatgcagatgaagtggagcgcatcggccagttcagctcccggggcggcatt
gtggacgtttatcccatcaatggggaaaatcctctgcgcatcgagttctttggggatgaa
atcgattccctgcgggaattcgatctggaaagcaagcgctccttgaagaatatcaacagc
ggcacgatcatgcctttggcgcagacggacagcgccgggcaggcggaagtattcctgtct
tatctggaaggcaaaggtgccgtgctctttgatgaaccaacgcgcctgcgggaacagatg
cgcaccatggtgcgggaaaatccggatatcaagggcaaagttttttcctgggaaacaatc
caggaagcggccaaggaaaaccgggtactgtatacggccatgctcctgcagcaggtacat
ggggcagaacctcagcagaccatcagcttcacggcacccaatgtagccagcttccaacgg
cagatggatctcttgatggatgagatcagccgctggctggtccagaaacagcgcatcctc
atcctgttgtcggaaaagagcaaggccgattccctgcgggaactgctggcccgtcaccgc
tatccctccctcgtcatcgatgccggcacagaactgcgtcatgactgcgtcaatatccag
gtgggacgtctgatcaatggctttgagatggctgcggccagtctcgtggtggtgacggaa
aaggatattttcggccatgccaagcgccgggcaatccgcaaggaaagcaagggggagaag
ctctcccatttccgggatatcaagcccggggattacgtggttcattccgcccatggtatc
ggtaagtatatcggcgtggaaacgctggatgtgggcggtatccacaaggattacctgcat
atcaaatacggcggcgacgataagctatacgtcccgacagaacaggtcaacctgctgcag
aaatacatcggtgcagaaggggaagtgccccgtctccatcgcatgggcggtacggaatgg
gccaaggccaaggccagggcgaaaaaatccgtggaggatattgccaagcagctgattgaa
atctatgccaagcggcgtcaggccaagggctttgcctttgccccggacgacagcagccag
catgattttgaggatgccttcccctatcaggaaacggatgaccaattaaaggccattgcg
gaaatcaaggccgatatggaaaaggagaagcccatggaccgcctgctttgcggtgatgtg
ggctttggcaagactgaggtggctatccgggcggcctataaggctgctatggatggtaag
caggtggctgtattggtgcccaccacagtcctggcccaacagcatttccagaccttcaat
gcccgctttatggaatttgcccccaaggtggatgtaatctgccgtttccgcaccttgaaa
gagcagaagcagaccattgaaaaggtgaagatggggcaggtggatatcctgatcggcacc
catgccatcctcaaccagaacaaggtgcagttcaagaatttaggtttgctgatcgtggac
gaggaacagcgttttggcgtcaagcaaaaggataagatccgcaagctttctgcgggcatt
gatgtgttgaccttgtcggcaacgccgattccccgcaccctacatatgtccttggtgggg
gcgcgggatatgagcatcatcgaaacgccgcctgctgaccgtttccccgtgcagacctat
gtggtggaggacaatgatgccattatcgccggggccatcaagcgcgagataaagcgtggt
ggtcaggtttactttgtctataaccgcgtcgataccatcgaccgcatgcgggaaaagctg
gaagccctcgtgcccgatgcccgcatccagaccgctcatggacagatgcctgaggccttg
ctggagcgggtgatgatggatttctacgaaggggaatacgatatcctcctggccaccagt
atcgtggaaaacggtttggatgtggccaacgccaacaccatcatcgtctacaatgccgac
catttcggcctgtcccagctctatcagatgcgggggcgcgtaggccgctcccatcacatg
gcctttgcttatttcgtctatcaggcggacaagatcctgacggaaacggccgagaagcgt
ttgcaggccatgaaggaatttgccgaattgggtgccggcttcaagattgccatgcgtgac
ctggaaatccgtggcgcgggcaatctcttaggctcccagcagcatggccatattgccagc
gttggttttgagatgtactgcaaactgctggaagaagctgtggacaaattgcagcatggc
gaaaaagaagtggcagaggtgcagccggatcccatcatcgatctgcaggtggaagcctat
atcgatggggactatgtcagcgacgccatgcataagatcgaaatctatcagcgcattgcc
gccatccgcagcaatgaggagatcaaatatctgctggacgagctcatcgatcgctttggc
gagcccagccaggccgtgatgaatctgctggaagtggcccgcatcaagaactacgcccgg
gaactcaaaatccgtaccattgcggagctgcccaaggcccttgatctctacatcctgccc
ggccatcgcctgcccgccaaggggcttatcgcagtggacaaggtgctggggcgcagcatg
cgctccctgcccgggaaaaacggctaccgctttgccctgcaggacagccagaaaaagaag
atcctgaactttgtcctgcggctcctgctgctggccaagggtgaggaagaagctgccctg
caggatggcagcgcaaagggaaaaactccaaagaaagtgaagaaataa
DBGET
integrated database retrieval system
