Selenomonas ruminantium subsp. lactilytica: SELR_pSRC400580
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Entry
SELR_pSRC400580 CDS
T01799
Symbol
dnaE
Name
(GenBank) putative DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sri
Selenomonas ruminantium subsp. lactilytica
Pathway
sri03030
DNA replication
sri03430
Mismatch repair
sri03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SELR_pSRC400580 (dnaE)
03430 Mismatch repair
SELR_pSRC400580 (dnaE)
03440 Homologous recombination
SELR_pSRC400580 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sri03032
]
SELR_pSRC400580 (dnaE)
03400 DNA repair and recombination proteins [BR:
sri03400
]
SELR_pSRC400580 (dnaE)
Enzymes [BR:
sri01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SELR_pSRC400580 (dnaE)
DNA replication proteins [BR:
sri03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SELR_pSRC400580 (dnaE)
DNA repair and recombination proteins [BR:
sri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SELR_pSRC400580 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HTH_1
Motif
Other DBs
NCBI-ProteinID:
BAL84709
UniProt:
I0GVC2
LinkDB
All DBs
Position
pSRC4:46901..50041
Genome browser
AA seq
1046 aa
AA seq
DB search
MIILFIGLHRHSHYSKRDAIAKIPDMVERIGELGQSAWALTDHGTTSGLMEAYKVTQKYN
KQHNTNIKFIFGCEMYWTPNVFIKDRKATCHLLVLARNEVGYKNLLRLTTIGYGDKGKRP
DQYFYNMRVTTEDMVECKDGLIFTSACMGGVLNPKVYDGIDWDKNLAYERATKFKGLFGD
SFYLEIQCSDTPTQREYNRNIIQMGKDLDIPVIVTEDSHYVNQHEADIHRKWLGVEIEPD
NPDAYYQTDDYFIHSEEQVREAIGYLPADTVDMLIDNTLKLADSIETVHLKFGGKNFPEL
DLGGKTPLEAVKEKCRAGWKKKMQSVPRSEWPVYVEQLEHEFKVLEKCDYLTYFLMTEDF
ISWARSQNIRMGIGRGSVGGCLVAYLMDITRIDPIKYGLIFERFAHDKRVSLPDVDIDMP
NSRRQDCIQYLVDKYKEVFHVRTFGKMAEKASIQRAARSLNYTPEEVRALSKAVSSIDEV
SDPELRQLAKSYQGIIQNYGCHASAVMLFPSDANQWTAIEKQGDDYVCAYEYHDLEAMGL
LKEDCLGIKTLDCIDECVRLVKEHHGVDVDVDALPDDDEKTFKMLQKLDVKGCFQIESGG
MIKLIDQMKPTSVFDLVPLVALYRPSTIQSGMLDSFVNRRAGTEKTIYLHDKLKGCLSET
YGVLLYQEQAMKIVQVMAGYDLGVADMFRRAIGRKIPSEMAELIPKFVKDGEALGIDART
MNKLAEWLTNCAAYQFNKSHSAAYGVTCYQTAYLKAHYPAEYLTAFLNAYKGDKQEDLLP
YVRDAKEHGIKILPPSADSDTCGWTCGVDADGQPWIRVALNFISGVGDLPVPLDKDSYLK
LPRDKVENLTKAGALDFVGDRAKLLEKLYKGGQLERLQKQLDTAAERQEKNRILYESAKE
GTKKKEDAKRKMLKYSEQKWDIQQRIDEVNALNCKDFDQSKAEMEVLGMTFVDVFAGYDL
SKYSTPEVDENGKPVESTPNRRIVLGCVRRWKPWKQKNGKPMAFFSIECPDGRTYDLVMF
NYVYAQLELNKVYGFVLQGNKFKKTL
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgattattttgtttatcggcttacacagacacagccattatagcaagcgtgatgccatc
gccaagattcccgatatggtagagcgcatcggcgaattaggccaatcagcatgggcactc
acagaccacggcacaacctcgggactgatggaggcttataaagtcacacagaaatacaac
aaacagcacaacaccaatatcaagtttattttcgggtgtgaaatgtactggacaccaaac
gtgttcatcaaagaccgcaaagccacctgccacctgctggtactggcaagaaacgaggtc
ggctacaaaaacctgctgcggcttacgactatcggttacggtgacaaaggaaagagaccg
gatcaatatttttacaatatgcgggtaacgaccgaggacatggtggaatgtaaagatggc
cttattttcacttcagcgtgcatgggaggcgtcctaaatccaaaggtatatgatggtata
gactgggataaaaacctcgcctacgagcgtgccacgaagtttaaggggctattcggagat
agtttttaccttgaaattcaatgctccgatacgccaacccagcgggaatacaacaggaac
atcattcagatgggcaaagacctcgacattcctgtaatcgtgacagaggacagtcattat
gtaaaccagcacgaggctgacatccaccgcaaatggctgggagtagaaatcgaacccgac
aaccctgacgcatactatcagaccgatgattattttattcactccgaagaacaggtaaga
gaggctattggttatcttccggctgatactgtcgatatgctgatagacaacacgctcaaa
ctggctgactccatcgaaactgtccacctgaaattcggcggcaagaacttccccgaactg
gatttaggcggtaagactccgctggaggccgtaaaggaaaagtgcagggctggctggaaa
aagaaaatgcagagcgttccccggtcggaatggcctgtatatgtcgaacagttagagcat
gagttcaaggtactggagaagtgcgattacttgacatactttctgatgactgaggacttt
atcagctgggcgcggtcgcaaaacattcgtatgggtattgggcgcggttctgttggtggc
tgtctagtggcgtatcttatggatattacacggattgaccccatcaaatatggcctgatt
ttcgagcgtttcgcacatgacaagagagtgtccctccctgatgtcgatattgatatgcca
aactcacggcggcaggactgtattcagtatcttgtcgataagtataaagaggtgttccac
gttcgcaccttcggtaaaatggccgagaaagcgtctatccaacgtgcagcacggtcgctg
aactacactcccgaggaagtcagggcactatccaaagcggtttcatccatcgatgaggtt
tcagatcccgagttacgccagctggcaaagtcgtatcagggcattatccaaaactacggc
tgtcacgcatcggcggtaatgctgttccccagtgacgctaatcagtggacggcgattgag
aagcagggtgatgactatgtatgtgcgtatgaataccacgacctcgaagctatggggctt
ttaaaagaagattgcctcgggattaagacgctggattgcattgatgagtgtgtacggctg
gtaaaagaacaccacggtgttgatgttgatgtggatgcgctccccgacgatgacgaaaag
accttcaaaatgctccaaaagctggatgtaaaagggtgttttcagattgagtccggcggc
atgattaaactgattgaccaaatgaaaccgacctcggtctttgatttagtccccctggtc
gcactgtacagaccttcgacaatccaatcaggtatgcttgatagctttgtgaaccgcagg
gcagggacagagaaaacaatctatctccatgacaaactgaaagggtgcttatcggaaacc
tacggcgttctgttatatcaggaacaggcgatgaagattgttcaagtaatggctgggtat
gacttgggcgttgcggatatgttcagacgtgccatagggcgcaagataccgtccgaaatg
gctgagcttatccctaaattcgtaaaggacggcgaagccctcgggatagatgcgcgaacc
atgaataagctggctgagtggctgacgaactgtgcggcgtatcagttcaacaaatcccat
agtgctgcctacggcgtgacctgttatcaaacagcatatcttaaagcccattatccggca
gagtatctgacggcgtttctgaacgcatacaaaggggacaagcaagaagatctgctccca
tacgttcgcgatgcgaaagaacacggcataaagattctgccaccttcggctgacagtgat
acctgtggttggacttgtggtgtagacgctgacggccagccttggattcgtgttgccttg
aatttcatatcgggcgtaggagatttgccagtaccactcgacaaagacagctacctaaaa
ctccctcgggacaaagtggagaacctaaccaaagccggagcgttggattttgtgggggac
agagccaaactgctggagaagctgtataaaggcggtcagctggaacgattgcagaaacaa
ctcgacactgctgcagaacggcaagaaaagaatcgtatcctgtatgaatcagcaaaagag
ggcacaaagaaaaaagaggatgccaaacgcaaaatgctgaaatattccgagcagaagtgg
gacatccagcaacgtatagacgaggtcaatgcgctgaactgcaaggactttgaccagtca
aaagcagaaatggaagtgctgggcatgacttttgtcgatgtgttcgccggatatgacctg
tccaaatactccacacctgaagtagacgagaacggaaaaccagtagagagcaccccaaat
cggaggattgtgctaggctgtgtcagacgctggaaaccgtggaaacagaagaacggaaaa
cctatggcctttttctccatagagtgtcctgacggtagaacctatgaccttgtaatgttt
aactatgtttatgcgcaattagagctaaacaaggtatatggctttgtcttgcagggcaat
aaattcaaaaaaacattgtaa
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