Streptomyces rimosus: CP984_21040
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Entry
CP984_21040 CDS
T07052
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
srim
Streptomyces rimosus
Brite
KEGG Orthology (KO) [BR:
srim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srim03019
]
CP984_21040 (hrpA)
Enzymes [BR:
srim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CP984_21040 (hrpA)
Messenger RNA biogenesis [BR:
srim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CP984_21040 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
AAA_16
T2SSE
AAA_25
PhoH
NACHT
ResIII
SLFN-g3_helicase
NTPase_1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QEV77163
LinkDB
All DBs
Position
complement(4940932..4944975)
Genome browser
AA seq
1347 aa
AA seq
DB search
MSSQPASARPDGAAPTLPALLERLPELMLRDQQRLGRRLDGARRIRKPEARAAVLAEIAD
GIEEAELRVAQRRAAVPAITYPEQLPVSQKKDEILEAIRDHQVVIVAGETGSGKTTQIPK
ICLELGRGVRGLIGHTQPRRIAARTVAERVAEELRTPLGEAVGWKVRFTDQVGSDTLVKL
MTDGILLAEIQTDRELRQYDTIIIDEAHERSLNIDFILGYLAQLLPRRPDLKVVITSATI
DPERFARHFGSFASVPAEGDGGDAPSAPIVEVSGRTYPVEVRYRPLLEEGGTDSDRDQIT
AICDAVDELRAEGPGDILVFLSGEREIRDTADALNKKNLPQTEVLPLYARLSHAEQHRVF
QRHTGRRIVLATNVAETSLTVPGIRYVIDPGMARISRYSYRTKVQRLPIEPISQASANQR
KGRCGRTSDGICIRLYSEDDFLTRPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDP
PDRRNIKDGVDLLHELGAIDPKQKDPKKRLTQMGRKLSQLPVDPRLARMVLEADRNGCVR
EVMVIAAALSIQDPRERPADKQQQADQQHARFKDETSDFLAYLNLWRYVREQQKALSSSA
FRRMCRNEYLNYLRIREWQDIYSQLRTVAKTMGVHLSEQDAAPDPIHTSLLSGLLSHIGL
KDTEAKNEYLGARSAKFAVFPGSALFKKPPRWIMSAELVETSRLWARVNARIEPEWIEPL
AQHLVKRTYSEPHWEQKMAAVMAYERVTLYGVPIVAQRKVNYGRIDPETSRDLFIRNALV
EGDWRTHHQFFHDNRKLLGEVEELEHRARRRDILVDDETLFDFYDQRLPEHVVSGAHFDS
WWKKKRHDEPELLNFEHSMLINESAEAVTKDDYPDSWRQGKLKFRVTYQFEPGADADGVT
VHIPLQVLNQVTSEGFDWQIPGLREQLVTELIRSLPKPIRRNYVPAPNFAARFLDSTVPL
QGSLTTALAAGLQRMVGVPVDPADFDLAKVPDHLKITFRVVDERRRKLAEAKDLEALRLK
LKPKTQAALTKAFAQAAERPAKEGKGSGAGAPTALEQRTGLTSWTLGTLPRTFETRRGGQ
PLKAYPALVDEGASVAVRLFDTEAEQQAAMWVGTRRLILLNIPSNPAKFAQGKLTNQQKL
ALSANPHGSIQALFEDCVTAATDRLIAAHGGPAWDEESFRKLFDAVRADLVDATMRTVQQ
TREVLAAWQACERRLKATTFPSLLPSLTDIKEQLAALIKPGFVTAHGTKRLPDLMRYLVA
VDRRLQQLPNNAERDRSRMAKVKEMQDEYAWLLEQFPPGRPVPAEAREIRWMIEELRVSY
FAHALGTAYPVSDKRIVKAVDAAVPKA
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtcagcctgcctccgcccggcccgacggtgccgcccccactctgcccgctctc
ctggagcggctgcccgagctgatgctgcgcgaccagcagcggctggggcgccggctcgac
ggcgcgcgccggatccgcaagcccgaggcccgcgcggccgtgctcgcggagatcgccgac
gggatcgaggaggcggagctgcgggtcgcgcagcgccgcgccgcggtgcccgcgatcaca
tatccggagcagctgccggtcagccagaagaaggacgagatcctcgaagcgatccgcgac
caccaggtcgtgatcgtcgcgggcgagaccggctccggcaagaccacccagatccccaag
atctgcctggagctcggccgtggcgtacggggcctgatcgggcacacccagccgcgccgg
atcgcggcccgtacggtcgccgagcgggtcgccgaggagctcaggacaccgctgggcgag
gcggtcggctggaaggtccgcttcaccgaccaggtcggctccgacaccctcgtgaagctg
atgaccgacggcatcctgctcgcggagatccagaccgaccgcgagctgcgccagtacgac
acgatcatcatcgacgaggcccacgagcgcagcctcaacatcgacttcatcctcggctat
ctggcgcagctgctgccccggcggcccgacctgaaggtcgtcatcacctccgcgaccatc
gacccggagcgcttcgcccggcacttcggctccttcgcctccgtaccggcggaaggggac
gggggcgacgccccgagcgcgccgatcgtcgaggtctccggccgtacgtacccggtggag
gtccgctaccgcccgctcctggaggagggcggcaccgacagcgaccgcgaccagatcacc
gcgatctgcgacgcggtggacgagctgcgggccgagggccccggcgacatcctggtgttc
ctctccggcgagcgcgagatccgtgacaccgcggacgcgctcaacaagaagaacctgccg
cagaccgaggtgctgccgctgtacgcgcgcctgtcgcacgccgagcagcaccgcgtcttc
cagcgccacaccggccgcaggatcgttctcgcgaccaacgtcgcggagacctcgctgacc
gtgccgggcatccggtacgtgatcgaccccggcatggcccggatctcccgctacagctac
cgcaccaaggtccagcggctgccgatcgagccgatttcgcaggccagcgccaatcagcgc
aagggccgctgcggccggaccagcgacggcatctgcatccggctgtattcggaggacgac
ttcctcacccgcccggaattcaccgacgccgagatcctgcggacgaacctggcctccgtc
atcctgcagatgaccgcggccggcctcggcgacatcgagaagttcccgttcatcgacccg
ccggaccgccgcaacatcaaggacggcgtcgacctgctgcacgagctgggcgccatcgac
ccgaagcagaaggaccccaagaagcggctcacccagatggggcgcaagctgtcccagctg
ccggtggacccgcggctggcccggatggtgctggaggccgaccgcaacggctgcgtacgc
gaagtcatggtgatcgcggcggcgctgtcgatccaggacccgcgcgagcggcccgccgac
aaacagcagcaggccgaccagcagcacgcccgcttcaaggacgagaccagcgacttcctg
gcgtatctgaacctgtggcggtacgtccgcgaacagcagaaggcgctgtcgtcctcggca
ttccgccggatgtgccgcaacgagtacctgaattacctgcgtatacgcgagtggcaggac
atctactcgcagctgcgtacggtcgccaagacgatgggcgtccacctcagcgagcaggac
gcggcgcccgaccccattcacacctccctcctctccggtttgctttcgcacatcggcttg
aaggacacggaagccaagaacgaatacctcggcgcccgcagcgcgaaattcgcggtcttc
cccggttcggcgctcttcaagaagccgccgcgctggatcatgtcggcggagctggtcgaa
acgtcccgcctgtgggcgcgggtgaacgccaggatcgagcccgagtggatcgagccgctg
gcccagcacctggtgaagcggacgtacagcgagccgcactgggaacagaagatggccgcg
gtgatggcgtacgagcgggtgacgctgtacggcgtaccgatcgtcgcccagcggaaggtg
aactacgggcggatcgacccggagacctcccgggacctgttcatccgcaacgccctggtc
gagggcgactggcgtacccaccaccagttcttccacgacaaccgcaaactgctcggcgag
gtcgaggagctggagcaccgggcgcgccggcgcgacatcctggtggacgacgagacgctc
ttcgacttctacgatcagcggctgcccgaacatgtcgtatccggtgcgcacttcgactcg
tggtggaagaagaagcgtcacgatgaaccggagttgctcaacttcgagcactccatgctc
atcaacgagtccgccgaagccgtcaccaaggacgactacccggactcctggcggcagggg
aagctgaagttccgcgtcacgtaccagttcgagccgggtgcggacgcggacggtgtgacc
gtccacatccccctccaggtgctcaaccaggtcacttccgaaggcttcgactggcagatc
ccgggtctgcgtgagcaattggtgaccgaactgatccgttcgctgcccaagccgatccgc
cgcaactacgtaccggcaccgaacttcgccgcccgcttcctggactcgacggtgcccctc
cagggctcgctgaccaccgccctggcggccgggctccagcggatggtcggcgtcccggtc
gacccggccgacttcgacctggccaaggtcccggaccatctgaagatcacgttccgggtg
gtcgacgagcggcgccgcaagctggccgaggccaaggacctcgaagcgctgcggctgaag
ctcaagccgaagacgcaggcggcgctcaccaaggcgttcgcgcaggccgccgagcggccc
gccaaggagggcaagggcagcggggccggggcgcccaccgccctggagcagcgcaccggc
ctgacgtcctggacgctcggcacgctgccgcgcaccttcgagacccggcgcggcggacag
cccctgaaggcgtacccggcgctggtggacgagggcgcgagcgtggccgtacgcctcttc
gacaccgaggcggagcagcaggccgcgatgtgggtcggcacccgtcgtctgattctgctg
aatattccgagcaacccagccaagttcgcgcagggaaagctcaccaatcaacagaagctc
gcactctcggccaacccccatggctccatccaggccctcttcgaggactgtgtgacggcc
gccacggaccggctgatcgccgcccacggcggaccggcctgggacgaggagtccttccgc
aagctcttcgacgcggtgcgcgccgatctggtggacgcgacgatgcgcacggtccagcag
acccgggaggtgctggcggcctggcaggcgtgtgagcgccgcctcaaagccaccaccttc
ccctccctgctcccctccctcaccgacatcaaggagcagctggccgccctgatcaagccc
ggcttcgtgaccgcgcacggcacgaagcggctgccggacctgatgcgctacctggtcgcg
gtcgaccgccggctccagcagctgccgaacaacgccgagcgggaccgctcccgcatggcg
aaggtcaaggagatgcaggacgagtacgcctggctgctggagcagttcccgccgggccgg
ccggtgcccgccgaggcccgggagatccgctggatgatcgaggagctgcgggtcagctac
ttcgcgcacgcgctcggcacggcgtacccggtctccgacaagcggatcgtgaaggccgtg
gacgcggcggtgcccaaggcgtga
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