Streptomyces rimosus: CP984_21520
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Entry
CP984_21520 CDS
T07052
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
srim
Streptomyces rimosus
Brite
KEGG Orthology (KO) [BR:
srim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
srim03016
]
CP984_21520
Enzymes [BR:
srim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CP984_21520
Transfer RNA biogenesis [BR:
srim03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CP984_21520
Prokaryotic type
tRNA splicing ligases
CP984_21520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEV77234
LinkDB
All DBs
Position
5050547..5051740
Genome browser
AA seq
397 aa
AA seq
DB search
MSYTEVPGAKVPIRMWTDPSTVEGVAMQQLHNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMHGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEEAIPVGRAMHDDPVDPG
RLHGLPTSGWDDFWARFDGVAEAVRFRQDRAVKQMGSLGGGNHFIEFCLDETGSVWLMLH
SGSRNIGKELADFHIGRARDLPHNQGLVDRDLAVFIADTPQMADYRNDLFWAQEYAKHNR
AIMMALFQDVVRKEFKKAKPTFEPVISCHHNYVAEERYDGMDLLVTRKGAIRAGSGEYGI
IPGSMGTGSYIVKGLGNPASFNSASHGAGRKMSRNAAKKRFSTRDLEEQTRGVECRKDSG
VVDEIPGAYKPIEKVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaccgaagtgcccggagccaaggttccgatccggatgtggacggacccgtcc
acggtcgaaggcgtggccatgcagcagctgcacaacgtggccaccctgccatggatcaag
ggcctggccgtgatgccggacgtgcattacggcaagggcgcgacggtcgggtcggtgatc
gccatgcacggagcggtctgcccggcggccgtcggtgtcgacatcggctgcggcatgagc
gccgtgaagacctccctcaccgccaacgacctccccggcgacctctcccggctccgctcg
aagatcgaggaggccatcccggtcggccgggccatgcacgacgacccggtggacccgggc
cggctgcacggcctgccgacgagcggctgggacgacttctgggcccgcttcgacggggtc
gcggaagcggtcaggttccggcaggaccgtgccgtcaagcagatgggctcgctcggcggc
ggtaaccacttcatcgagttctgtctcgacgagaccgggtcggtatggctgatgctgcac
tccggctcccgcaacatcggcaaggagctggccgacttccacatcggccgggcccgggac
ctgccgcacaaccagggcctggtcgaccgcgacctcgccgtcttcatcgcggacaccccg
cagatggcggactaccgcaacgacctcttctgggcgcaggagtacgccaagcacaatcgc
gcgatcatgatggcgctcttccaggacgtcgtccgcaaggagttcaagaaggcgaagccg
acgttcgagccggtgatctcctgccaccacaactatgtggcggaggagcggtacgacggc
atggacctgctggtcacccgcaagggcgcgatccgcgccggaagcggcgagtacggcatc
atccccggctcgatgggcaccggctcctacatcgtcaagggtctcggcaacccggcgtcc
ttcaactccgcctcacacggcgccggccggaagatgagccgcaacgcggccaagaagcgc
ttctcgacgcgtgacctggaggagcagacccggggcgtggagtgccgcaaggactccggc
gtcgtcgacgagatcccgggcgcgtacaagccgatcgagaaggtcatcgaccagcagcgg
gacctggtcgaggtggtggccaagctcaagcaggtggtgtgtgtgaaggggtga
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