Streptomyces rimosus: CP984_22170
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Entry
CP984_22170 CDS
T07052
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
srim
Streptomyces rimosus
Pathway
srim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CP984_22170 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srim03021
]
CP984_22170 (rpoB)
03400 DNA repair and recombination proteins [BR:
srim03400
]
CP984_22170 (rpoB)
Enzymes [BR:
srim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CP984_22170 (rpoB)
Transcription machinery [BR:
srim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CP984_22170 (rpoB)
DNA repair and recombination proteins [BR:
srim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CP984_22170 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QEV77337
LinkDB
All DBs
Position
5180673..5184155
Genome browser
AA seq
1160 aa
AA seq
DB search
MAASRNASTANTNNGDSTAPLRISFAKIKEPLGVPNLLALQTESFDWLLGNAAWKGRVEA
ALESGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKERDFTYAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFCINGTERVVVSQLVRSPGVYFDSQID
KTSDKDIFTAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGGDEPLDAGVLTTDDIIATIKYLVKLHAGETETIGENGTEIVVETDDIDHFG
NRRLRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQTNPLSGLTHKRRLSALGPGGLSRERAGLDVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRVNVFGFIETPYRKVVDGRVTEQVDYLTADEEDRFLIAQANAPLTEDMQF
AEGRVMCRRRGGEVDLAAREDVDYMDVSPRQMVSAATAMIPFLEHDDANRALMGSNMMRQ
AVPLIKAEAPLVGTGMEYRCAVDAGDVIKAEKDGVVQEVSADYITVANDDGTYTTYRVAK
FTRSNQGTSFNQKVVVDEGARVVVGQVLADGPSTDEGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLSDLDERGIIRIGA
EVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPVEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASQGWKVEGDEDWQKRLQAIGADDVAPRTNVATPV
FDGAREDELAGLFDATLPNRDGERMVKNTGKARMFDGRSGEPFPDPISVGYMYILKLHHL
VDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDV
TGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVFR
AAEELGIDLSRREPSSVEEV
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcaacgcctcgactgccaatacgaacaacggcgacagcaccgccccg
ctgcgcatctcttttgcgaagatcaaggagcccctcggggttccgaacctccttgcgctg
cagaccgaaagcttcgactggctgctcggcaatgccgcatggaagggtcgcgtcgaggct
gcgctggaaagtggtcaggacgtccccaccaagtccggtctggaggagatcttcgaagag
atctccccgatcgaggacttctccgggtcgatgtcgctgacgttccgcgaccaccgattc
gagcccccgaagaactccatcgacgagtgcaaggagcgcgacttcacgtacgcggccccg
ctcttcgtcaccgccgagttcaccaacaacgagaccggggagatcaagtcccagacggtc
ttcatgggcgacttcccgctcatgaccaacaagggcaccttctgcatcaacggcaccgag
cgtgtcgtcgtctcgcagctggtccgctcgccgggtgtctacttcgacagccagatcgac
aagacctccgacaaggacatcttcaccgccaagatcatcccgtcccggggtgcctggctg
gagatggagatcgacaagcgcgacatggtcggcgtgcgcatcgaccgcaagcgcaagcag
tcggtgaccgtcctcctcaaggccctcggctggacgaccgagcagatcctcgaggagttc
ggcgagtacgagtccatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctgcgtccgggcgagccgccgacgcgcgaggccgcg
cagacgctgctggagaacctctacttcaacccgaagcgctacgacctggcgaaggtcggc
cgctacaaggtcaacaagaagctcggcggtgacgagccgctcgacgcgggcgtgctgacc
accgacgacatcatcgccacgatcaagtacctggtgaagctccacgcgggcgagaccgag
acgatcggcgagaacggcacggagatcgtcgtcgagaccgacgacatcgaccacttcggc
aaccgccgtctgcgcaacgtcggcgagctgatccagaaccaggtccgtacgggtctcgcc
cgtatggagcgcgtcgtgcgcgagcgcatgaccacccaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcccagttcatggaccagaccaacccgctgtcgggcctgacccacaagcgccgt
ctgtcggcgctgggccccggtggtctctcccgtgagcgggccggcctggacgtccgtgac
gtgcacccctcgcactacggccgcatgtgcccgatcgagacgcccgaaggcccgaacatc
ggtctgatcggttcgctcgcctcgtacggccgggtcaacgtcttcggcttcatcgagacg
ccgtaccgcaaggtcgtcgacggccgggtcaccgagcaggtcgactacctgaccgccgac
gaggaagaccgcttcctgatcgcccaggcgaacgcgcccctcaccgaggacatgcagttc
gccgagggccgcgtgatgtgccgccgccgcggtggtgaggtcgacctcgccgcccgcgag
gacgtggactacatggacgtctcgccgcgccagatggtgtcggccgcgaccgccatgatc
cccttcctggagcacgacgacgccaaccgcgcgctcatgggatcgaacatgatgcgccag
gccgtgccgctgatcaaggcggaggccccgctggtcggcaccggcatggagtaccgctgc
gcggtcgacgccggtgacgtcatcaaggcggagaaggacggtgtggtccaggaggtctcc
gcggactacatcaccgtcgccaacgacgacggcacgtacaccacgtaccgcgtcgccaag
ttcacccgctcgaaccagggcacctccttcaaccagaaggtcgtcgtggacgagggcgcc
cgtgtggtcgtgggccaggtgctcgccgacggtccgtccacggacgagggcgagatggcg
ctcggcaagaacctcctcgtggcgttcatgccgtgggagggccacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctgtcctcgatccacatcgaggag
cacgaggtcgacgcccgggacaccaagctcggcccggaggagatcacccgggacatcccg
aacgtctccgaggaggtcctctcggacctcgacgagcgcggcatcatccggatcggtgcc
gaggtcgtcgccggcgacatcctcgtcggcaaggtcacgcccaagggtgagaccgagctg
acccccgaggagcgcctgctgcgcgcgatcttcggtgagaaggcccgtgaggtccgtgac
acctcgctgaaggtcccgcacggcgagatcggcaaggtcatcggcgtccgcgtcttcgac
cgcgaggagggcgacgagctgcccccgggcgtgaaccagctggtccgcgtctacgtggcg
cagaagcgcaagatcaccgacggtgacaagctcgccggccgccacggcaacaagggcgtc
atctccaagatcctgccggtcgaggacatgccgttcctggaggacggcaccccggtcgac
atcatcctcaacccgctgggtgtcccgtcccgaatgaacccgggacaggtcctggagatc
cacctcggctggctcgccagccagggctggaaggtcgagggcgacgaggactggcagaag
cgcctccaggcgatcggcgccgacgacgtcgcgccgcgcaccaacgtcgcgaccccggtc
ttcgacggtgcgcgcgaggacgagctcgccggtctgttcgacgcgacgctgcccaaccgc
gacggcgagcggatggtcaagaacaccggcaaggcccggatgttcgacggccgttccggt
gagccgttcccggacccgatctcggtcgggtacatgtacatcctgaagctccaccacctg
gtcgacgacaagctgcacgcgcgttcgaccggcccgtactcgatgatcacccagcagccg
ctgggtggtaaggcccagttcggtggccagcgcttcggtgagatggaggtgtgggcgctg
gaggcatacggcgccgcgtacgccctccaggaactgctgaccatcaagtccgacgacgtg
accggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacatccccgagcccggc
attcccgagtccttcaaggtcctcatcaaggagatgcagtcgctgtgcctgaacgtggag
gtgctgtcctcggacggcatgtccatcgagatgcgcgacacggacgaggatgtcttccgc
gccgcggaggagctcggcatcgacctgtcccggcgcgagccgagcagcgtcgaagaggtc
tga
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