Streptomyces rimosus: CP984_22175
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Entry
CP984_22175 CDS
T07052
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
srim
Streptomyces rimosus
Pathway
srim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CP984_22175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srim03021
]
CP984_22175
03400 DNA repair and recombination proteins [BR:
srim03400
]
CP984_22175
Enzymes [BR:
srim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CP984_22175
Transcription machinery [BR:
srim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CP984_22175
DNA repair and recombination proteins [BR:
srim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CP984_22175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
TarH
Motif
Other DBs
NCBI-ProteinID:
QEV77338
LinkDB
All DBs
Position
5184252..5188151
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDEERRTRDLPSLEAHVSVERQQIEQRRDADLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDELL
YRELRDRFGTYFMGGMGAAALQKRLESFDLDEEAEKLREIIRTGKGQKKTRALKRLKVVS
AFLQTRNSPNGMVLDCIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEAEREVIGE
GRSFGSVAEAIMAFDNRELSLQAKVDIRFPIGTVPPRGWTPPVQEEGDPEWQQGDSFRLR
TTLGRALFNELLPEDYPFVDYSVGKKQLSAIVNDLAERYPKVVVAATLDNLKAAGFHWAT
RSGVTVAVSDIVVPEAKKSIVAGYEAQDEKVQKQYERGLITKDERTQELINIWTKATNEV
AEAMNDNFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLRIASKD
ASGVLRKADDVESSVYARMLAEDVVVDGKVVASANVDLGDVLIDQLIAHGVEEVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
LGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKVIVTPDDGSDETAYGVSKRARL
LVGEGDHVEVGQPLTVGAVNPHDVLRILGQRAVQVHLVGEVQKVYNNQGVAIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERTKFESENRRVVQEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggcctggcgaccgcggacgacatc
cgacagtggtcccacggcgaggtcaagaagccggagaccatcaactaccgcaccctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgccgtgagcggatgggccacatcgaactggccgctccc
gtcacgcacatctggtacttcaagggcgttccgtcgcggctgggctacctgctcgacctc
gccccgaaggacctggaaaaggtcatctacttcgccgcctacatgatcacgtgggtggac
gaggagcgccgtacgcgcgacctgccctcgctggaggcacacgtctccgtcgagcgccag
cagatcgagcagcgccgcgacgccgacctggaggcccgcgccaagaagctcgagaccgac
ctggccgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgagggc
gccgagcgtgagatgaagcagctgcgcgaccgcgcgcagcgcgagatcgaccgcctcgac
gaggtgtggagccgcttcaagaacctcaaggtccaggacctggagggcgacgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcatgggcggcatgggcgcggcggcg
ctgcagaagcgcctggagtccttcgacctcgacgaagaggccgagaagctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctgaaggtcgtctcc
gcgttcctgcagacccgcaacagccccaacggcatggtgctggactgcatcccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtcatcaaccgcaacaaccgcctgaagcggcttctcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgcccggtcaccggtcccggtaaccgcccgctgaag
tccctcagcgacatgctgaagggtaagcagggccgcttccgccagaacctgctcggcaag
cgtgtggactactccgcgcgttccgtgatcgtcgtcggtccgcagctgaagctgcaccag
tgcggcctgcccaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgagcgcggccgc
acggtcgtctacgacgtcctcgaagaggtcatcgcggagcacccggttctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccattcagattcacccgctcgtgtgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtccggtcaccatgccgacccaggac
atggtgctgggcctgttcttcctcaccaccgacgaggcggagcgcgaggtcatcggtgag
ggccggtccttcggctcggtcgccgaggcgatcatggccttcgacaaccgggagctgtcg
ctccaggcgaaggtcgacatccgcttcccgatcggcaccgtcccgccgcgtggctggacc
ccgccggtgcaggaggagggcgacccggagtggcagcagggtgacagcttccggctgcgg
acgaccctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctctccgcgatcgtcaacgacctggccgagcgctacccg
aaggtcgtcgtggcggcgacgctggacaacctgaaggcggccggtttccactgggcgacc
cgttccggtgtcaccgtcgcggtctccgacatcgtcgtgcccgaggccaagaagtccatc
gtcgcgggctacgaggcccaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcactcaggaactgatcaacatctggaccaaggcgaccaacgaggtc
gccgaggcgatgaacgacaacttccccaagacgaaccccatcttcatgatggttgactcg
ggtgcccgaggaaacatgatgcagatgcggcagatcgccggtatgcgcggtctggtgtcg
aacgcgaagaacgagaccatcccgcggccgatcaaggcgtcgttccgcgagggtctgtcc
gtgctggagtacttcatctccacccacggtgcccgtaagggtctcgcggacaccgcgctg
cgtaccgccgactcgggttacctcacccgtcgtctcgtggacgtctcccaggacgtcatc
atccgcgaggaggactgcggcaccgagcgcggtctgaagctgcggatcgccagcaaggac
gcctccggcgtgctgcgcaaggcggacgacgtcgagtcctccgtgtacgcgcggatgctg
gccgaggacgtcgtggtggacggcaaggtcgtcgcgtcggccaacgtcgacctcggtgac
gtgctcatcgaccagctgatcgcgcacggcgtggaggaggtcaagacccgctcggtcctg
acctgtgagtccgccgtcggcacctgcgccttctgctacggccgctcgctggccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggcacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
ctgggtctgccgcgtgtcgtcgagctcttcgaggcccgtacgcccaagggcgtcgccccg
atctccgaggccgccggccgcgtgcggatcgaggagaccgagaagaccaagaaggtcatc
gtcacgccggacgacggcagcgacgagacggcttacggcgtctccaagcgtgcccgtctg
ctggtgggcgagggtgaccacgtcgaggtcggccagccgctgaccgtgggtgccgtcaac
ccgcacgacgtgctgcgcatcctgggccagcgggccgtccaggtccacctggtcggcgag
gtccagaaggtctacaacaaccagggcgtggcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgcgtgacgatcatcgagtccggcgacgcggagctgctgccg
ggcgagctggtggagcgtacgaagttcgagagcgagaaccgtcgtgtggtccaggaaggc
ggccacccggcctccggccgtccgcagctgatgggtatcaccaaggcttcgctggccacc
gagtcctggctgtcggcggcgtccttccaggagacgacccgggtgctcaccgacgcggcg
atcaacgccaagtcggactccctgatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggcctgtcccgttaccgcaacatccgggtggagcccaccgaggag
gccaaggccgcgatgtactcggccgtcggttacgacgacatcgactactcgcccttcggc
accggctccggccaggcggtcccgctggaggactacgactacggtccgtacaaccagtaa
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integrated database retrieval system
