Streptomyces rochei: SRO_2244
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Entry
SRO_2244 CDS
T06265
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
srj
Streptomyces rochei
Pathway
srj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
srj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SRO_2244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srj03400
]
SRO_2244
Enzymes [BR:
srj01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SRO_2244
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SRO_2244
DNA repair and recombination proteins [BR:
srj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SRO_2244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF7573
Auto_anti-p27
DZR
NFACT_N
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
BBC93420
LinkDB
All DBs
Position
complement(2556910..2557770)
Genome browser
AA seq
286 aa
AA seq
DB search
MPELPEVEVVRRGLARWVAHRTVAETEVLHPRAVRRHVAGGEDFAHRLKGHHIGEPSRRG
KYLWLPLEETNQSVLAHLGMSGQLLVQPQETPDEKHLRIRIRFADSLGTELRFVDQRTFG
GLSLHDNTPDGLPDVIAHIARDPLDALFDDDAFHQALRRKRSTVKRALLDQSLISGVGNI
YADEALWRARIHYERPTAHFTRPVTAELLGHIRDVMNAALAVGGTSFDSLYVNVNGESGY
FDRSLDAYGREGEPCRRCGTPMRRRPWMNRSSYFCPKCQRAPRVAS
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagttgcccgaggtcgaggtcgtccggcgggggctggcgcggtgggtggcccat
cgcaccgtcgccgagaccgaggtgctgcatccgcgtgccgtgcgccgccatgtggccggc
ggcgaggacttcgcgcaccggctcaaggggcatcacatcggcgagcccagccggcgcggc
aagtatctgtggctgccgctggaggagacgaaccagtcggtgctcgcccacctcgggatg
agcgggcagctgctggtgcagccgcaggagacgcccgacgagaagcatctgcggatccgg
atccggttcgccgactcgctcggcaccgagctgcggttcgtggaccaacgcaccttcggc
gggctgtcgttgcacgacaacaccccggacgggctgcccgacgtcatcgcgcacatcgcc
cgcgacccgctcgacgcgctgttcgacgacgacgccttccaccaggccctgcgccgcaag
cgcagcaccgtcaaacgggccctgctggaccagtcgttgatcagcggggtcggcaacatc
tacgcggacgaggcgctttggcgcgcccgtatccactacgagcggccgaccgcccacttc
acccgcccggtcacggccgaactcctcggccacatcagggacgtgatgaacgcggccctc
gccgtcggcggcaccagcttcgacagcctgtacgtcaacgtcaacggcgagtcgggctac
ttcgaccgttcgctcgacgcctacggccgcgagggcgagccctgccgccgctgcggcacc
cccatgcggcgccgcccgtggatgaaccgctccagctacttctgcccgaagtgtcagcgg
gcgccgcgcgtcgcgtcgtaa
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