Streptomyces rochei: SRO_2480
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Entry
SRO_2480 CDS
T06265
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
srj
Streptomyces rochei
Pathway
srj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SRO_2480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srj03021
]
SRO_2480
03019 Messenger RNA biogenesis [BR:
srj03019
]
SRO_2480
Transcription machinery [BR:
srj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SRO_2480
Messenger RNA biogenesis [BR:
srj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SRO_2480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBC93656
LinkDB
All DBs
Position
complement(2811897..2813918)
Genome browser
AA seq
673 aa
AA seq
DB search
MSDTTDLMGARVEETAAAPATDASAPATGAGSRRRRGTGLEGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAQGSAPKAEAATETKPKRRTTSKARTGESADGAQKAAKSEAPAE
KAQQQIEIPGQPAAGDDAPTERRRRRATAEAGSPAAGGAETAAAEAKTEARTDAKSEAKA
DASAQQPQQQGESAKNDAGDGEGRGRRDRRERGRERGERGDRAERGDRGDRRNKGDDQQG
GQRQQQGQQGGRQDRQQQDDDDFEGGRRGRRGRYRDRRGRRGRDEIAEPQVAEDDVLIPV
AGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHLTGAVRQPKDGERREKFN
ALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETDPGVLTTRIIDLVSPIGKGQRG
LIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVISSTFDR
PAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTAL
YPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGNMELKLDRKLADKRI
FPAVDVDASGTRKEEILLGAEELGIVWKLRRVLHALDQQQAIELLLDKMKQTKSNVEFLM
QIQKTTPTPGNGD
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgcacgtgtcgaggagaccgctgccgcgcccgcc
acggacgcctccgcgcctgccaccggtgccggctcccggcggcgccggggtaccggcctt
gagggcatggtgctggccgagctgcagcaggtcgcctcgggcctcggtatccggggcacg
gcgcggatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggcccagggcagt
gcccccaaggccgaggccgccaccgagaccaagccgaagcgccggaccacctccaaggcc
cgcaccggcgagagcgcggacggcgcgcagaaggcggccaagtccgaggcgcccgccgag
aaggcgcagcagcagatcgagattcccggtcagcccgccgccggagacgacgcgccgacc
gagcgccgtcgtcgtcgtgccaccgccgaggccggcagccccgccgcgggcggtgccgag
acggccgccgccgaggcgaagaccgaggcgcgtaccgacgcgaagagcgaggccaaggcc
gacgcgtccgcccagcagccgcagcagcagggcgagtccgcgaagaacgacgccggtgac
ggcgagggccgcggccgccgcgaccgccgtgagcgcggccgtgagcgcggcgagcgtggc
gaccgcgctgagcgcggtgaccgcggcgaccgccgcaacaagggcgacgaccagcagggc
ggccagcgtcagcagcagggccagcagggcggccgccaggaccggcagcagcaggacgac
gacgacttcgagggcggccgtcgtggccgtcgtggccgctaccgcgaccgtcgtggccgt
cgtggccgcgacgagatcgccgagccgcaggtcgccgaggacgacgtcctgatccccgtc
gcgggcatcctggacatcctcgacaactacgccttcatccggacctccggctacctgccg
ggcccgaacgacgtgtacgtctccctcgcccaggtccgcaagaacggcctgcgcaagggt
gaccacctcaccggtgcggtccgtcagccgaaggacggggagcgccgcgagaagttcaac
gcgctcgtccgcctcgactccgtcaacggcatggcgcccgaacacggccgcggccgcccg
gagttcaacaagctgacgccgctgtacccgcaggaccgcctccgcctggagacggacccg
ggcgtgctgacgacccggatcatcgacctcgtgtcgccgatcggcaagggtcagcgcggt
ctgatcgtggccccgccgaagaccggcaagaccatgatcatgcaggcgatcgccaacgcg
atcacgcacaacaaccccgagtgccacctgatggtcgtcctggtcgacgagcgtccggaa
gaggtcaccgacatgcagcggtcggtcaagggcgaggtcatctcctcgaccttcgaccgc
ccggccgaggaccacaccacggtcgccgagctggccatcgagcgcgccaagcgcctcgtg
gagctgggccacgacgtggtcgtgctgctggactccatcacgcgtctgggccgcgcctac
aacctcgcggcgccggcctccggccgcatcctgtccggtggtgtcgactcgaccgcgctg
tacccgccgaagcgcttcttcggtgccgcgcgcaacatcgaggacggcggctcgctcacc
atcctggcgacggcgctcgtggacaccggctcccgcatggacgaggtgatcttcgaggag
ttcaagggcaccggcaacatggagctcaagctcgaccgcaagctcgccgacaagcgcatc
ttcccggcggtggacgtggacgcgtccggcacccgtaaggaagagatcctgctgggcgcc
gaggagctgggcatcgtctggaagctgcgccgggtgctgcacgccctggaccagcagcag
gcgatcgagctgctgctggacaagatgaagcagaccaagtcgaacgtcgagttcctgatg
cagatccagaagacgacgccgacccccggcaacggcgactga
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