Streptomyces rochei: SRO_3069
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Entry
SRO_3069 CDS
T06265
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
srj
Streptomyces rochei
Pathway
srj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
srj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SRO_3069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
srj03021
]
SRO_3069
03400 DNA repair and recombination proteins [BR:
srj03400
]
SRO_3069
Enzymes [BR:
srj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SRO_3069
Transcription machinery [BR:
srj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SRO_3069
DNA repair and recombination proteins [BR:
srj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SRO_3069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
BBC94245
LinkDB
All DBs
Position
complement(3436584..3440483)
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITYVDEERRTRDLPSLEAHVSVERQHIENRRDSDLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAEKLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDGELRDVKGE
GRAFGSTAEATMAFDAGELSLQSPVDIRFPVGTIPPRGWTPPAREEGEPEWQQGDSFRLR
TTLGRALFNELLPEDYPFVDYSVGKKQLGEIVNDLAERYPKVIVAATLDNLKAAGFYWGT
RSGVTVAISDVVVPEAKKAIVAGYEAQDEKVQKQYERGLITKEERTQELIAIWTKATNEV
AEAMNENFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLAIAERG
EDGVLRKTGNVETSVYARCLAEDIVVDGKVLAPAGTDLGDVLIDELVKHGVETVKTRSVL
TCESAVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEASGRVRIEETEKTKKLVVTPDDGSDETAFPISKRAKV
LVREGEHVEVGQQLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVQEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctccggatcggcctggccaccgctgacgacatc
cgtcagtggagccacggcgaggtcaagaagcccgagacgatcaactaccgcaccctgaag
cccgaaaaggacggactcttctgcgagaagatcttcggtcctacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgcgagcgctgtggcgtc
gaggtcacgcgcgccaaggtgcgccgtgagcggatgggccacatcgagctcgccgctccc
gtcacccacatctggtacttcaagggcgtcccgtcccgcctgggctacctgctggacctc
gccccgaaggacctggagaaggtcatctacttcgcggcgtacatgatcacgtacgtcgac
gaggagcgccgcacccgcgacctgccctccctggaggcgcatgtctccgtcgagcgtcag
cacatcgagaaccgccgcgactccgacctggaggcccgcgccaagaagctcgagaccgac
ctggccgagctggaggccgagggcgccaaggccgatgtgcgccgcaaggtgcgcgagggt
gccgagcgcgagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgcctcgac
gaggtctggaaccgcttcaagaacctcaaggtccaggacctggagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacgtacttcgacggttcgatgggtgccgcggcg
ctccagaagcgcctggagtccttcgacctcgacgaagaggccgagaagctccgcgagatc
atccgcaccggcaagggccagaagaagacccgcgccctcaagcggctgaaggtcgtctcc
gcgttcctccagacctccaacagccccaagggcatggtcctggactgcgtcccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtcatcaaccgcaacaaccgcctgaagcggcttctcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggcggtcgacgcc
ctcttcgacaacggccgtcgcggtcgcccggtgacgggccccggcaaccgtccgctgaag
tccctcagcgacatgctgaagggtaagcagggtcgattccgtcagaacctgctcggcaag
cgagtcgactactcggcgcgttccgtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgcccaaggcgatggcccttgagctgttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgc
accgtggtgtacgacgtcctcgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcgcccaccctgcaccgcctcggtatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgcccggtgacgatgccgacccaggac
atggtcctcggtctgttcttcctcaccaccgacggcgagctgcgtgacgtcaagggcgag
ggccgcgcgttcggctccacggccgaggcgaccatggcgttcgacgccggcgagctctcg
ctccagtcgccggtcgacatccgcttcccggtgggcaccatcccgccgcgaggctggacc
ccgccggcccgcgaggagggcgagcccgagtggcagcagggggactcgttccgtctgcgc
accaccctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctcggcgagatcgtcaacgacctggcggagcgctacccc
aaggtgatcgtggcggcgacgctcgacaacctgaaggcggccggcttctactggggtacc
cgctcgggtgtcaccgtggccatctccgacgtcgtcgtgcccgaggccaagaaggccatc
gtcgcgggctacgaggcccaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggaagagcgcactcaggagctcatcgcgatctggaccaaggcgaccaacgaggtc
gccgaggcgatgaacgagaacttccccaagaccaaccccatcttcatgatggttgactcg
ggtgcccgaggaaacatgatgcagatgcggcagatcgccggtatgcgtggtctggtgtcg
aacgcgaagaacgagaccatcccgcgtccgatcaaggcctcgttccgtgagggcctgtcc
gtgctggagtacttcatctccacccacggtgcccgtaagggtctggcggacaccgctctg
cgtaccgccgactcgggttacctcacccgtcgtctggtcgacgtctcccaggacgtcatc
atccgcgaggaggactgcggcaccgagcgcggcctcaagctggcgatcgccgagcgtggc
gaggacggtgtcctgcgcaagacgggcaacgtcgagacgtccgtgtacgcgcgctgcctc
gccgaggacatcgtggtcgacggcaaggtgctggccccggccggtaccgacctcggcgac
gtgctcatcgacgagctggtcaagcacggtgtggagacggtcaagacccgctcggtcctg
acctgtgagtccgccgtcggcacctgcgcgatgtgctacggccgttcgctggccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggtacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccgcgtgtcgtcgagctcttcgaggcccgtaccccgaagggtgtcgccccg
atctccgaggcctccggccgggtgcggatcgaggagactgagaagacgaagaagctcgtc
gtcaccccggacgacggcagcgacgagacggcgttcccgatctcgaagcgtgccaaggtc
ctggtccgcgagggcgagcacgtcgaggtgggccagcagctcaccgtgggtgccaccaac
ccgcacgacgtgctgcgcatcctgggtcagcgtgccgtccaggtccacctggtcggcgag
gtccagaaggtgtacaactcgcagggtgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgtgtgacgatcatcgagtcgggcgacgcggagctgctgccc
ggcgagctggtcgagcgttcgaagttcgagaccgagaaccgtcgtgtggtccaggagggc
ggtcaccccgcctccggtcgtccgcagctgatgggtatcaccaaggcctcgctggcgacg
gagtcctggctgtcggccgcctccttccaggagacgacccgagtcctgacggatgcggcg
atcaacgccaagtccgacagcctcatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggtctgtcccgctaccgcaacatccgggtcgagccgaccgaggag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgcccttcggc
acgggctccggccaggccgttccgctggaggactacgactacggtccgtacaaccagtaa
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integrated database retrieval system
