Streptomyces rochei: SRO_3528
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Entry
SRO_3528 CDS
T06265
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
srj
Streptomyces rochei
Pathway
srj03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
srj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SRO_3528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srj03400
]
SRO_3528
Enzymes [BR:
srj01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SRO_3528
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SRO_3528
DNA repair and recombination proteins [BR:
srj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SRO_3528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Zn_ribbon_8
Zn_ribbon_TFIIB
Ribosomal_S13
DZR
DZR_2
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
BBC94704
LinkDB
All DBs
Position
complement(3931342..3932130)
Genome browser
AA seq
262 aa
AA seq
DB search
MPELADVEGFRRLLDSCARGRVVRRVDVRDTGVLHGIGARGLRDALKGRRFAEPERRGKW
LLARTDGPTLLLHFGMTGLLLCADPDDPVEPHDRVLFTLDDDHRLHYRDQRKLRGLWLAH
DESEVDRLLARQGPDALTVTRDDLAAALATRRGRLKTTLTDQSVLAGLGNLLADEILWRA
RLRPDRRARDLTPAELRRLHTQMRRTLRSALPTGRVPPRASWLTGHRDDPDPACPRCGTP
LRRTRLGGRGTVWCPRCQGDGD
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagctcgccgacgtcgaaggcttccgccgcctgctggactcctgtgcccgcggc
cgcgtcgtacgccgtgtcgacgtccgcgacaccggcgtcctgcacggcatcggcgcgcgc
gggttgcgcgacgcgctcaaggggcggcggttcgcggagccggagcggcgcgggaagtgg
ctgctggcccgcaccgacggacccacgctgctgctgcacttcggcatgaccggcctgctg
ctgtgcgccgacccggacgacccggtcgagccccatgaccgcgtcctgttcacgctggac
gacgaccaccggctgcactaccgcgaccagcgcaaactccggggcctgtggctggcccac
gacgagtccgaggtcgaccggctgctcgcgcgccagggccccgacgcgctgacggtcacc
cgggacgacctcgcggccgccctcgccacccgccgcggccgcctgaagaccaccctcacc
gaccagtccgtcctcgccggcctcggcaacctgctcgccgacgagatcctgtggcgggcc
cggctgcgccccgaccgccgagcccgcgatctcaccccggcggaactccggcgcctgcac
acccagatgcgccgcaccctccgctccgcgctccccaccggccgcgtcccaccccgcgcc
tcctggctcaccggccaccgcgacgacccggacccggcgtgcccgcgctgcgggaccccg
ctgcgccggacgcggctgggcggccggggaacggtgtggtgcccccggtgccagggggac
ggggactga
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