Streptomyces rochei: SRO_3884
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Entry
SRO_3884 CDS
T06265
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
srj
Streptomyces rochei
Brite
KEGG Orthology (KO) [BR:
srj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srj03019
]
SRO_3884
Enzymes [BR:
srj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SRO_3884
Messenger RNA biogenesis [BR:
srj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SRO_3884
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
T2SSE
NACHT
SLFN-g3_helicase
AAA_16
AAA_25
AAA_30
ResIII
NTPase_1
PhoH
TsaE
MetJ
SRP54
Motif
Other DBs
NCBI-ProteinID:
BBC95060
LinkDB
All DBs
Position
complement(4318882..4322826)
Genome browser
AA seq
1314 aa
AA seq
DB search
MSTHPAPALGSLAARLTELSLRDAHRLGRRLEGARKIRKPEARDAVFAEIEGELDKAAGR
MAERRARVPAVTYPEQLPVSQKKDEIAAAIRDHQVVIVAGETGSGKTTQIPKICLELGRG
VRGMIGHTQPRRIAARTVAERVAEELRTPLGEAVGWKVRFTDQVNPDATFVKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFGDAPIVEVSGRTYPVEVRYRPLLEEESEDADRDQITAICDAVEELQAEGKGDILVFLS
GEREIRDTADALEKKKYRFTEVLPLYARLSHAEQHRVFQQHTGRRIVLATNVAETSLTVP
GIKYVIDPGFARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFL
ARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELGAIDPA
EKDPRKRLTDTGRKLAQLPVDPRLARMVLEADRNGCVREVMVIAAALSIQDPRERPADKQ
AQADQQHARFKDETSDFLAYLNLWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDIY
TQLRTVAKQMGIHLAEDDAPADRVHVSLLAGLLSHVGMKDVREGNKNEYLGARNAKFAIF
PGSALFKKQPKFVMSAELVETSRLWARVNAKIEPEWVEPIAGHLLKRTYSEPHWEKDQAA
VMAYEKVTLYGVPIVAQRKVNYGRIDPEVSRELFIRNALVEGDWRTHHKFYADNRKLLSE
VEELEHRARRRDIVVDDETLFDFYEQRVPEHVVSGAHFDSWWKRKRHEQPDFLDFEREML
IRESAEAVTKDDYPDSWRQGALKFRVTYQFEPGADADGVTVHIPLQVLNQVTDEGFDWQI
PGLREEVVTELIRSLPKPIRRNYVPAPNYAKAFLERAVPLQEPLTVTMARELKRMVGVPF
EAEDFDWAKVPEHLRITFRIVDERRRKLAEDKDLEALKLSLKPKARKALSQAAAATASRQ
GGPALEREGLTDWTIGTLSRVFETRRAGQPVKAYPALVDDGDTVSVRLFDTEAEQAEAMW
KGTRRLILRNIPVNPAKFASEKLSNQQKLGLSANPHGSIQALFDDCAMAAADKLIADFGG
PAWDEESYRKLYDKVRAEIVDTTVRTVGQVQQVLAAWGACERRLKAVRSPALLANLTDVR
EQLDALVKPGFVTWAGIRRLPDLMRYLVAADRRLQQMPANVQRDTTRMEKVHEMRDEYAW
LLEQLPQGRPVPQQVLDIRWMLEELRVSYFAHALGTAYPVSDKRIVKAIDAAAP
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcatccagcccccgccctcggctccctcgccgcccgtctgaccgagttgtcg
ctgcgtgacgcgcaccggctcggacggcggctcgagggcgcgcgcaagatccgtaagccc
gaagcccgtgatgccgtgttcgccgagatcgagggcgagctcgacaaggcggcgggccgg
atggccgagcggcgcgcccgcgtgccggccgtcacctatcccgaacagctgcccgtcagc
cagaagaaggacgagatcgcggcggccatccgcgatcaccaggtcgtcatcgtcgccggt
gagaccggttccggaaagacgacgcagatccccaagatctgtctggaactgggccgcggt
gtgcgcggcatgatcgggcacacccagccccgccggatcgccgcccgtaccgtcgccgag
cgtgtcgccgaggagctgcgcaccccgctcggcgaggccgtcggctggaaggtgcggttc
accgaccaggtgaacccggacgccaccttcgtgaagctgatgacggacggcatcctgctc
gccgagatccagaccgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcc
cacgagcggtccctcaacatcgacttcctgctgggctatctcgcccagctgctgcccaag
cggccggacctcaaggtcgtcatcacctcggcgaccatcgaccccgagcgcttctcccgg
cacttcggggacgccccgatcgtcgaggtcagcgggcggacgtaccccgtggaggtgcgc
taccggccgctgctcgaagaagagtccgaggacgccgaccgcgaccagatcaccgcgatc
tgtgacgcggtcgaggagctccaggccgagggcaagggcgacatcctcgtcttcctctcc
ggcgagcgggagatccgcgacacggcggacgcgctggagaagaagaagtacagattcacc
gaggtgctgccgctgtacgcccggctgtcgcacgccgagcagcaccgggtcttccagcag
cacaccgggcgccggatcgtgctggccacgaacgtcgccgagacctcgctgaccgtcccg
ggcatcaagtacgtcatcgaccccggcttcgcccggatcagccgctacagccaccgcacc
aaggtccagcggctgcccatcgagccggtctcgcaggccagcgccaaccagcgcaagggc
cgctgcggccgtacctccgacggcatctgcatccggctgtacagcgaggacgacttcctg
gcccggccggagttcaccgacgcggagatcctgcgcaccaacctggcctccgtcatcctc
cagatgaccgcggccggcctcggcgacatcgagaagttcccgttcatcgacccgccggac
caccgcaacatccgcgacggcgtgcagctcctccaggaactgggcgcgatcgaccccgcg
gagaaggacccccgcaagcggctcaccgacaccggccgcaagctcgcccagctgcccgtg
gacccgcggctcgcccggatggtgctggaggcggaccgcaacggctgtgtccgcgaggtc
atggtcatcgcggccgccctgtccatccaggacccgcgcgaacgccccgccgacaagcag
gcgcaggccgaccagcagcacgcccgtttcaaggacgagaccagcgacttcctcgcctat
ctcaacctgtggcggtatgtgcgcgagcagcagaaggagcgcggctccagctcgttccgg
cggatgtgcaagcaggagtacctgaacttcctgcgcatccgcgagtggcaggacatctac
acccagctgcggaccgtggccaagcagatgggcatccatctcgccgaggacgacgccccc
gccgaccgcgtccatgtctccctgctcgccggactcctctcccacgtcgggatgaaggac
gtacgggagggcaacaagaacgagtatctgggcgcccgcaacgccaagttcgcgatcttc
ccgggctcggcgctgttcaagaagcagcccaagttcgtgatgtcggccgagctggtggag
accagccggctgtgggcgcgggtcaacgcgaagatcgagcccgagtgggtcgagccgatc
gccgggcatctgctgaagcgcacgtacagcgagccgcactgggagaaggaccaggcggcc
gtgatggcgtacgagaaggtcacgctgtacggcgtgccgatcgtcgcccagcgcaaggtg
aactacggccggatcgaccccgaggtctcccgcgagctgttcatccgcaacgcgttggtg
gagggcgactggcgcacccaccacaagttctacgccgacaaccgcaagctcctcagcgag
gtcgaggagctggagcaccgggcgcggcgccgggacatcgtggtggacgacgagacgctg
ttcgacttctacgagcagcgggtgcccgaacatgtcgtctcgggcgcgcacttcgactcc
tggtggaagcggaagcggcacgagcagccggacttcctggacttcgagcgggagatgctg
atccgcgagtccgcggaggccgtcaccaaggacgactatccggacagctggcggcagggt
gccctgaagttccgggtcacctaccagttcgagccgggcgcggacgcggacggtgtgacc
gtgcacatcccgctccaggtcctcaaccaggtcaccgacgagggcttcgactggcagatc
ccgggcctgcgggaagaggtcgtcacggagctgatccggtccctgcccaagccgatccgg
cgcaactacgtgcccgcgccgaactacgccaaggcgttcctggagcgggcggtgcccctc
caggagccgctgaccgtgacgatggcgcgtgagctcaagcgcatggtcggggtgccgttc
gaggcggaggacttcgactgggccaaggtccccgagcatcttcggatcaccttccggatc
gtcgacgagcggcgccggaagctggccgaggacaaggacctggaggcgctcaagctcagc
ctgaagccgaaggcgcgcaaggcgctctcccaggccgcggcggcgaccgcgtcccgccag
ggcgggcccgccctggagcgcgaggggctgaccgactggacgatcggcacgctcagccgg
gtcttcgagacgcgccgggccggacagccggtgaaggcgtacccggcgctggtggacgac
ggcgacacggtctccgtacggctcttcgacacggaggccgagcaggcggaggccatgtgg
aagggcacccggcggctgatcctgcgcaacatcccggtgaaccctgccaagttcgcgtcc
gagaagctcagcaaccagcagaagctggggctgtccgccaatccgcacgggtcgatccag
gccctgttcgacgactgtgcgatggccgccgcggacaagctgatcgcggacttcggcggc
cccgcgtgggacgaggagtcgtaccggaagctgtacgacaaggtgcgcgccgagatcgtg
gacaccacggtgcgcacggtcggccaggtgcagcaggtgctggccgcgtggggggcctgt
gagcggcgcctgaaggccgtgcgcagccccgcgctcctcgcgaacctcacggacgtccgc
gagcagctggacgcgctggtgaagcccgggttcgtcacctgggcggggatacgccggctg
ccggatctgatgcggtacctggtggcggcggaccggcggctccagcagatgccggcgaac
gtgcagcgggacaccacgcgtatggagaaggtccatgagatgcgggacgagtacgcctgg
ctgctggagcagcttccgcaggggcggcccgttccgcagcaggtcctggacatccgctgg
atgctggaggagctgcgggtcagctatttcgcgcatgcgctgggcacggcgtaccccgtc
tccgacaagcggatcgtgaaggcgatcgacgcggccgcaccgtaa
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