Streptomyces rochei: SRO_5400
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Entry
SRO_5400 CDS
T06265
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
srj
Streptomyces rochei
Pathway
srj03030
DNA replication
srj03430
Mismatch repair
srj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SRO_5400
03430 Mismatch repair
SRO_5400
03440 Homologous recombination
SRO_5400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srj03032
]
SRO_5400
03400 DNA repair and recombination proteins [BR:
srj03400
]
SRO_5400
Enzymes [BR:
srj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SRO_5400
DNA replication proteins [BR:
srj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SRO_5400
DNA repair and recombination proteins [BR:
srj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SRO_5400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BBC96576
LinkDB
All DBs
Position
5926329..5929868
Genome browser
AA seq
1179 aa
AA seq
DB search
MSKPPFTHLHVHTQYSLLDGAARLKDMFNACNEMGMTHIAMSDHGNLHGAYDFFHTAQKS
GVTPIIGIEAYVAPESRRNKRKIQWGQPHQKRDDVSGSGGYTHKTMWAVNRTGLHNLFRL
SSDAYAEGWLQKWPRMDKETISQWSEGIVASTGCPSGELQTRLRLGQFDEALKAASEYQD
IFGKDKYFLELMDHGIEIEHRVRDGLLEIGKKLGIPPLVTNDSHYTYAHEATAHDALLCI
QTGKNLSDPDRFKFDGTGYYLKSTDEMYAIDSSDAWQQGCANTLLVAEMVDTTGMFEKRD
LMPKFDIPEGYTEVTWFKEEVSRGMQRRFPGGIPEDRQKQADYEMDVIISMGFPGYFLVV
ADFIMWAKNNGIAVGPGRGSAAGSIVAYAMGITDLDPIPHGLIFERFLNPERISMPDVDI
DFDERRRVEVIRYVTEKYGADKVAMIGTYGTIKAKNAIKDSARVLGYPYAMGDRITKAMP
ADVLGKGIPLSGITDPQHPRYSEAGEVRGMYENEPDVKKVIDTARGVEGLVRQMGVHAAG
VIMSSETITDHVPVWVRHTDGVTITQWDYPSCESLGLLKMDFLGLRNLTIMDDAVKMVKA
NKGLDIDLLSLPLDDPTTFELLQRGDTLGVFQFDGGPMRSLLRLMKPDNFEDISAVSALY
RPGPMGMNSHTNYALRKNGQQEITPIHPELEEPLKEVLDVTYGLIVYQEQVQKAAQIIAG
YSLGEADILRRVMGKKKPEELAKNFTIFQGGARKNGYSDEAIQALWDVLVPFAGYAFNKA
HSAAYGLVSYWTAYLKANHPAEYMAGLLTSVKDDKDKSAVYLNECRRMGIRVLPPNVNES
ESNFAAQGDDVILFGLSAVRNVGTNVVESIIKCRKAKGKYASFPDYLDKVEAVVCNKRTT
ESLIKAGAFDTMGHTRKGLTAQYEPMIDNVVAVKRKEAEGQFDLFGGMGDDSADEPGFGL
DVQFTDDEWDKTYLLAQEREMLGLYVSDHPLFGLEHVLSDKADAGISQLTGGEHADGAVV
TIGGIISGLQRKMTKQGNAWAIATVEDLAGSIECMFFPATYQLVSTQLVEDAVVFVKGRL
DKREDVPRLVAMELMVPDLSNAGANAPVVLTIPATRVTPPMVSRLGEILSHHKGDSEVRI
KLQGPRKTTVLRLDRHRVKPDPALFGDLKVLLGPSCLAG
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
gtgtcaaagccgccgttcacgcacctgcacgtccacacccagtactcgctgctggacggt
gccgcgcggctgaaggacatgttcaatgcctgcaatgaaatgggcatgacgcacatcgcc
atgtccgaccacggcaacctccacggggcgtacgacttcttccacacggcccagaagtcc
ggggtcacgccgatcatcgggatcgaggcctatgtggcccccgagtcccggcgcaacaag
cgcaagatccagtggggccagccgcaccagaagcgcgacgacgtctccggttccggtggt
tacacccacaagacgatgtgggcggtgaaccgcaccggtctgcacaacctcttccggctg
tcctccgacgcgtacgccgagggctggctccagaagtggccccggatggacaaggagacc
atctcccagtggtccgagggcatcgtcgcctccaccggctgcccctccggcgagctccag
acccggctgcgcctcggccagttcgacgaggcactcaaggccgccagcgagtaccaggac
atcttcggcaaggacaagtacttcctggagctgatggaccacggcatcgagatcgagcac
cgggtccgcgacggcctcctggagatcggcaagaagctcggcatccccccgctggtcacc
aacgactcgcactacacgtacgcccatgaggcgaccgcccatgacgcgctgctgtgcatc
cagaccggcaagaacctctccgacccggaccgcttcaagttcgacggcaccggctactac
ctgaagtccacggacgagatgtacgccatcgactcctcggacgcctggcagcagggctgc
gccaacacgctcctggtggccgagatggtcgacaccaccggcatgttcgagaagcgcgac
ctgatgccgaagttcgacatccccgagggctacaccgaggtcacctggttcaaggaggag
gtcagccggggcatgcagcgccgcttccccggcggcatccccgaggaccgccagaagcag
gccgactacgagatggacgtcatcatctcgatgggcttccccggctacttcctcgtggtc
gccgacttcatcatgtgggccaagaacaacggcatcgcggtcggccccggccgaggctcc
gcggccggttcgatcgtcgcctacgccatgggcatcaccgacctcgacccgatcccgcac
ggcctgatcttcgagcggttcctcaaccccgagcgcatctcgatgcccgatgtcgacatc
gacttcgacgagcgccggcgcgtcgaggtgatccggtacgtcaccgagaagtacggcgcc
gacaaggtcgccatgatcggcacctacggcaccatcaaggccaagaacgcgatcaaggac
tcggcgcgcgtgctgggctacccgtacgcgatgggcgaccgcatcaccaaggccatgccc
gccgacgtcctcggcaagggcatcccgctgtccggcatcaccgacccgcagcacccccgc
tactcggaggcgggcgaggtccggggaatgtacgagaacgaaccggacgtgaagaaggtc
atcgacaccgcgcgcggcgtggagggcctggtccggcagatgggtgtgcacgcggccggc
gtgatcatgtccagcgagaccatcaccgaccacgtcccggtctgggtccggcacaccgac
ggcgtgaccatcacacagtgggactacccgagctgtgagtcgctcggcctgctgaagatg
gacttcctgggcctgcgcaacctcacgatcatggacgacgcggtcaagatggtgaaggcc
aacaagggcctcgacatcgacctgctgtccctgccgctggacgaccccacgaccttcgaa
ctgctccagcgcggcgacaccctcggcgtcttccagttcgacggcggccccatgcgctca
ctgctgcgcctgatgaagcccgacaacttcgaagacatctccgccgtgtcggccctgtac
cggccgggcccgatgggcatgaactcccacacgaactacgccctgcgcaagaacgggcag
caggagatcacgccgatccaccccgagctggaggagccgctcaaggaggtcctggacgtc
acctacggcctgatcgtctaccaggagcaggtgcagaaggccgcccagatcatcgccgga
tactcgctcggtgaggccgacatcctgcgccgcgtgatgggcaagaagaagcccgaggag
ctggcgaagaacttcaccatcttccagggcggtgcccgcaagaacggctacagcgacgag
gccatccaggcgctgtgggacgtgctggtcccgttcgccggctacgcgttcaacaaggcg
cactcggccgcgtacggcctggtgtcgtactggaccgcctacctcaaggccaaccacccc
gccgagtacatggccggactgctgacctccgtcaaggacgacaaggacaagtcggcggtc
tacctcaacgagtgccgccgcatgggcatccgggtgctgccgccgaacgtcaacgagtcg
gagtccaacttcgccgcccagggtgacgacgtgatcctcttcggcctctccgcggtgcgc
aacgtgggaaccaacgtggtcgagtcgatcatcaagtgccgcaaggccaaggggaagtac
gcctccttccccgactacctcgacaaggtcgaggcggtcgtctgcaacaagcgcaccacc
gagtcgctgatcaaggccggcgcgttcgacaccatggggcacacccgcaagggcctcacc
gcgcagtacgagccgatgatcgacaacgtggtcgcggtcaagcgcaaggaggccgagggc
cagttcgacctcttcggcggcatgggcgacgacagcgcggacgagcccggcttcggtctc
gacgtgcagttcaccgacgacgagtgggacaagacctatctactcgcccaggagcgggag
atgctcggtctgtacgtctccgaccacccgctgttcggcctcgaacacgtgctgtccgac
aaggccgacgcgggcatctcccagctcaccggcggcgagcacgcggacggcgcggtggtc
accatcggcggcatcatctcgggcctccagcgcaagatgaccaagcagggcaacgcctgg
gcgatcgccaccgtcgaggacctcgcgggctccatcgagtgcatgttcttcccggccacc
tatcagctggtgtcgacccaactggtcgaggacgccgtggtgttcgtcaagggccgcctc
gacaagcgcgaggacgtgccccggctcgtcgccatggaactgatggtgccggacctgtcc
aacgcgggcgccaacgcgccggtggtcctcaccatcccggcgacccgggtcaccccgccc
atggtcagccgcctcggcgagatcctcagccaccacaagggcgacagcgaggtgcggatc
aagctccaggggccccgcaagaccacggtgctgcgcctggaccggcaccgggtcaagccc
gacccggcgctcttcggcgacctgaaggtgctgctcggcccgtcctgtctcgcgggctga
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integrated database retrieval system
