Streptomyces rectiverticillatus: FGW37_10905
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Entry
FGW37_10905 CDS
T06927
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
srk
Streptomyces rectiverticillatus
Pathway
srk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FGW37_10905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srk03019
]
FGW37_10905
03009 Ribosome biogenesis [BR:
srk03009
]
FGW37_10905
Enzymes [BR:
srk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FGW37_10905
Messenger RNA biogenesis [BR:
srk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FGW37_10905
Ribosome biogenesis [BR:
srk03009
]
Prokaryotic type
rRNA processing factors
FGW37_10905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
QLE72045
LinkDB
All DBs
Position
complement(2500434..2504726)
Genome browser
AA seq
1430 aa
AA seq
DB search
MLESIEPTEPGSAGTEADNNSPSDTLPARGRRRAASRPAGPPASAAASAEAPEAAAAPAE
QAPAAPEAEAPAAPSTPARPRRRATRKAAAPSGAPKAAEPAVATAPEVAESPQPVELTAE
PAEEPAAEPAPRTRRRATRKATAPAGSPKGAEAVVEPVEPAVAAAVEEEAEEVAEELQAA
SAAPARPRRRATRKATAPAGAPKAAEAAEPVEAPAAAPVAEAAPEAAEAAAPARTRRRAV
RRASAPAGAPQAAEAAEPVVAEAVTEPVEAPAAAPEAAEAAAPARTRRRAVRRASAPAGA
PEAAEAVVEPSAPVAEPVAEEPQEAPAAPARTRRRAVRKATAPAGAPQAAEQVTEPAEAE
AAAAPEEQAPAAEPRGRRTRRRATAPATAAEAEQPAEAAAEPAPARTRTRRRVAAGDAEQ
AAAALEAAKEASRAREAEAAPAAEPAAPARGRRRAVRPPTAVFQAPVFTEPMFQTPETAA
AAAAAAAEEEQPEAEVVEERVVEAQPAGRRRRRRRGEPAEAEQVEAEAPAAVEEEPEAEE
AEVTAEDEEQGERPSRRRRRGGRRRRRGEAADAEGEFEDEQAAEAEEAEAREEEAEEAET
DEGAGSSSSRRRRRRRRRTGEAVDTEPGADEPERTVVKVREPRKREEREPGTGFDEVQSI
KGSTRMEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQSGERTQIGVLEDN
VLVEHFVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNFEALGMGN
GPRRIETALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDT
ERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKQISTSSPS
LLYGEPDMTVRVVRDIFNEDFSKVIVSGDQAWETIHGYVSHVAPDLADRLQKWTSDVDVF
ATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGKFTGQGGNLEETVTRNNLE
AAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLV
QMTRKRVGQGLLESFSEGCVHCNGRGVIVHMDQPASVGGGGGGKRGKKKGKGAAAAPEHE
HVHEVAPATEEVPSIVEAPAAAAVEPAPEAPELEPVAVTEAQLQPSVGGDEEWFGSAAEA
EAAAASSKRGRTRRRATRKASAPAGAPRAAEAEPEVVVEAPAPQAAAPQAAAPQAAAPQA
AAEPAAEPKAEAVEPVAEPVAEPVAEAAPAAPARPRRRVTRRASAPAGSPSDTEAAVVVV
PSVAAAAEPEPAPVETPAAEPVAEGVEGVAEAEAAAPAEKPARKTAAKKATAKKAPAKKT
AAKKTAAKKTTTTAKKATAKKAATKTAAKKAPAKRATKKAAAEAVSSSED
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaatccattgagcccaccgagcccggctccgccgggaccgaagccgacaacaac
agccccagcgacacgctgccggcacgtggccgccgccgtgcggcctcccgccccgcgggc
ccgccggcctcggccgccgcctccgccgaggcccccgaagccgccgccgcacccgcggag
caggcccctgcagcgccggaggccgaggccccggccgccccttcgacgcccgcccgcccg
cgccgccgcgccacccgcaaggccgctgcgccctccggtgcgccgaaggccgccgagccc
gccgtggcgaccgcccccgaggtggccgaatccccgcagccggtcgagctgaccgcagag
cccgccgaggagcccgcggccgagcccgctccccgtacgcgccgccgcgccacccgtaag
gccaccgccccggcgggttcgcccaagggtgccgaggccgtcgtcgagccggtcgagccg
gccgtcgccgccgccgtcgaggaagaggccgaggaggtggccgaggaactgcaggccgcg
tcggccgcccctgcccgtccgcgccgccgggccacgcgcaaggccactgcgcccgccggt
gctccgaaggccgccgaggctgccgagcccgtggaggctccggccgccgctccggtcgcc
gaggccgcccctgaggccgccgaggccgctgcccccgcccgtacgcgccgtcgcgccgtg
cgccgcgcttccgctccggcgggtgcgccgcaggctgccgaggccgccgagccggtcgtc
gccgaggccgtcaccgagcccgtggaggctccggccgccgcccccgaggccgccgaggct
gctgcccccgctcgtacgcgccgtcgcgccgtgcgccgtgcctccgctccggcgggtgcg
ccggaggccgccgaggccgtcgtggagccgtccgcgccggtcgccgagcccgtggccgaa
gagccgcaggaggccccggccgccccggcccgtacgcgccgccgtgccgtgcgcaaggcg
accgctccggcaggtgccccgcaggccgccgagcaggtgaccgagcccgccgaggccgag
gccgccgccgcgcccgaggagcaggcccccgccgccgagccccgtggccgccgtacgcgc
cgccgtgccaccgcccccgccaccgccgccgaggccgagcagcccgccgaggccgccgcc
gagccggctccggcccgtacgcggacgcgccgccgtgtcgccgccggtgacgccgagcag
gccgccgccgcgctcgaggccgccaaggaggcgagccgcgcccgcgaggccgaggccgcc
ccggccgcggagcccgccgcccctgcgcgtggccgccgccgcgccgtgcgccccccgacg
gccgtcttccaggcgcccgtcttcaccgaaccgatgttccagaccccggagaccgccgct
gctgccgccgccgcggccgccgaggaggagcagcccgaggccgaggtcgtggaggagcgc
gtcgtcgaggcgcagcccgccggccgccgccgtcgccgccgccgtggcgagcccgccgag
gccgagcaggtggaggccgaggcccccgccgcggtcgaggaggagccggaggccgaggag
gccgaggtcaccgccgaggacgaggagcagggcgagcgcccctcgcgccgccgtcgccgg
ggcggccgccgtcgccgccggggcgaggccgcggacgccgagggcgagttcgaggacgag
caggccgccgaggccgaggaggccgaggcccgcgaggaggaggccgaggaggccgagacc
gacgagggcgcgggcagctccagcagccgtcgccgccgtcgccggcgccgccgcaccggt
gaggccgtcgacaccgagccgggtgcggacgagcccgagcgcacggtcgtcaaggtccgc
gagccgcgcaagcgcgaggagcgcgagccgggcaccggcttcgacgaggtgcagtccatc
aagggctcgacccgtatggaggcgaagaagcagcgccgccgcgagggccgcgagcagggc
cgccgccgcgtgccgatcatcacggaggccgagttcctggcccgccgcgaggccgtcgag
cgggtgatggtcgtccgccagagcggtgagcgcacccagatcggcgtgctggaggacaac
gtcctcgtcgagcacttcgtcaacaaggagcaggccaccagctacgtcggcaacgtctac
ctgggcaaggtccagaacgtgctgccgtcgatggaggccgccttcgtcgacatcggcaag
ggccgcaacgccgtcctctacgccggcgaggtcaacttcgaggcgctcggcatgggcaat
ggcccgcgccgcatcgagaccgcgctgaagtccggccagtccgtgctcgtccaggtcacc
aaggacccgatcgggcacaagggcgcgcgtctgaccagccaggtctccctcccgggccgc
tacctcgtgtacgtgcccgagggctcgatgaccggcatcagccgcaagctgcccgacacc
gagcgggcgcgtctgaagaccatcctcaagaagatcgtccccgaggacgcgggcgtgatc
gtgcgcaccgccgccgagggtgcgagcgaggacgagctgcgccgtgacgtcgagcgtctg
caggcgcagtgggaggacatccagaagaagtcgaagcagatctcgacgagctcgccgagc
ctgctctacggcgagccggacatgaccgtccgcgtcgtccgcgacatcttcaacgaggac
ttctccaaggtcatcgtcagcggtgaccaggcctgggagaccatccacggctacgtctcg
cacgtcgcgcccgacctggccgaccggctgcagaagtggacgtcggacgtcgacgtcttc
gccacgtaccggatcgacgagcagctgatgaaggcgctggaccgcaaggtctggctgccg
agcggcggctcgctggtgatcgaccggaccgaggcgatggtcgtcgtcgacgtcaacacc
ggcaagttcaccggccagggcggcaacctggaggagacggtcaccaggaacaacctggag
gcggccgaggagatcgtgcgccagctgcggctgcgcgacctcggcggcatcatcgtgatc
gacttcatcgacatggtgctggagtccaaccgggacctggtgctgcggcgcctgctggag
tgcctgggccgggaccgcacgaagcaccaggtcgccgaggtgacctcgctgggcctggtc
cagatgacccgcaagcgggtgggccagggcctgctggagtccttctccgagggctgcgtg
cactgcaacggccgcggtgtgatcgtccacatggaccagccggcgtccgtcggcggcggc
ggtggcggcaagcgcggcaagaagaagggcaagggtgcggctgccgcgcccgagcacgag
cacgtgcacgaggtggctccggccaccgaggaggtcccctcgatcgtggaggcccccgcg
gccgccgccgtcgagccggcccccgaggcgcccgagctggagccggtggccgtcaccgag
gcgcagctgcagccgtcggtcggcggtgacgaggagtggttcggcagcgccgcggaagcg
gaggctgcagccgcctcttccaagcgtggccgtacgcgccgccgggcgacccgcaaggcg
tccgctccggcgggtgcgccgcgggccgccgaggcggagcccgaggtcgtggtggaggcg
cctgcgccgcaggccgccgccccgcaggccgccgccccgcaggccgccgccccgcaggcc
gccgccgagccggccgcggagccgaaggccgaggctgtggagcccgtcgccgagccggtg
gcggagcccgtggcggaggcggccccggccgctcccgcccggccgcgccgccgggtgacc
cgccgggcctccgcgcccgccggctccccgtcggacaccgaggccgccgtcgtggtcgtc
ccgtccgtggccgcggccgcggagccggagcccgcgccggtggagaccccggccgcggag
ccggtcgccgagggcgtcgagggcgtcgccgaggcggaggccgcggcccccgccgagaag
cccgcccgcaagacggccgcgaagaaggccaccgccaagaaggcgccggcgaagaagacc
gccgccaagaagacggcggccaagaagacgacgacgaccgcgaagaaggccacggccaag
aaggccgccacgaagacggcggccaagaaggccccggccaagcgggcgacgaagaaggct
gccgcggaagcggtgtcctcctcggaggactga
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