Serratia plymuthica 4Rx13: SOD_c01140
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Entry
SOD_c01140 CDS
T02710
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
srl
Serratia plymuthica 4Rx13
Pathway
srl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOD_c01140 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
srl03019
]
SOD_c01140 (rhlB)
Enzymes [BR:
srl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOD_c01140 (rhlB)
Messenger RNA biogenesis [BR:
srl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SOD_c01140 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CCDC138_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGO53148
LinkDB
All DBs
Position
complement(138144..139433)
Genome browser
AA seq
429 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPLVLEALEKKGFHHCTPIQALALPLTLSGRDVAGQAQTGTGKT
LAFLASTFHYLLSNPAKQDRQTNQPRALIMAPTRELAVQIHSDAEALSQSTGLKLGLAYG
GDGYDKQLKVLESGVDILVGTTGRLIDYAKQNYIDLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPAVDQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIQEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCEDVWGHLAADGHRVGLLTGDVAQKKRLRILE
DFTKGNLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGHSISLA
CEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRLARPRGGNGPRRNSAPRRGGSA
PRNNRKRPG
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttgaccgaacagaagttttccgacttcgccctgcacccgttagtc
cttgaagcccttgaaaaaaaagggtttcaccattgcacgcctatccaggcgttagcattg
ccgctcacgctctccgggcgtgacgttgcaggtcaggcgcaaaccggtaccggaaagacg
ctggcatttttagcgtctacttttcactatttgctttctaacccggcgaaacaggatcgc
cagaccaaccagccgcgtgccttgatcatggccccaacgcgtgaactggcggtgcagatc
cactccgatgcggaagccctgtcccagtccaccggcctgaaacttggcctggcttacggc
ggcgacggctacgacaaacagctgaaagtgctggaaagcggcgtggatatcctggtgggt
actaccggtcgtttaatcgattacgccaaacagaactacatcgatctgggcgctatccag
gtcgtagtgctggatgaagccgatcgcatgtacgatctgggcttcatcaaagacattcgc
tggctgttccgccgcatgcctgcggtcgatcaacgcctgaacatgctgttctctgccacc
ctgtcctatcgcgtccgcgaactggctttcgagcagatgaacaacgctgaatatgttgaa
gtggaaccggaacagaaaaccggccaccgcattcaagaagaattgttctacccgtccaac
gaagaaaaaatgcgcctgctgcagacgctgatcgaagaagagtggccggaccgctgcatc
atcttcgccaacaccaagcatcgctgtgaagacgtctggggccatttggcggccgacggg
caccgcgtaggcctgctgaccggcgatgtggcgcagaaaaaacgcctgcgtatcctggaa
gacttcaccaagggcaacctcgatattctggtcgccaccgacgtcgccgcccgcggcctg
cacatcccgttggttacgcacgtattcaactacgatctgcctgacgactgcgaagactat
gttcaccgcatcggtcgtaccggccgtgccggcgaaagcggccattccatcagcctggcc
tgcgaagaatacgcgctcaacctgccggcgatcgaaacctataccggccacagcattccg
gtgagcaagtacaacagcgacgcgttgctgactgacttgcctgcgccgaaacgtcttgcg
cgtccacgcggcggcaacggcccacgccgtaattccgcaccgcgccgcggtggcagcgcg
ccacgcaataaccgtaaacgtccaggctga
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